PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG241000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28451.8 Da PI: 4.8431 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.1e-10 | 152 | 196 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR+++ f++L +++P a +K +K++ L +++Y+++L+ Pavir.9KG241000.1.p 152 VLGERRRREKMHLQFATLASIIPDA-----TKRDKVSLLGSTIDYVQHLR 196 556**********************.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.41E-10 | 139 | 200 | No hit | No description |
PROSITE profile | PS50888 | 14.291 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-13 | 149 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-13 | 150 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-8 | 151 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-10 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MNSSSANHQW LEELENEDLG ELDFIDPLSM QQLAESLADE LWDQPTQEQQ VQLDLRRQPM 60 CPTGFSFLGD VSKYYAGAEG FPTTMTAISA GGGDSMFSFT DGKSKQLSFS SPEPKQEGDA 120 TATAGRFGAP PPPTTMETKG RRRASSRVHE HVLGERRRRE KMHLQFATLA SIIPDATKRD 180 KVSLLGSTID YVQHLRGRLK ALQDEQLQST GSTAESPPLD ARCCIGSEDD GEASQKIEAD 240 VRGTTVLLRV VCREKITGC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 158 | RRRASSRVHEHVLGERRRR |
2 | 146 | 158 | RVHEHVLGERRRR |
3 | 154 | 159 | ERRRRE |
4 | 155 | 160 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG241000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796991.1 | 1e-161 | transcription factor bHLH18-like isoform X1 | ||||
TrEMBL | A0A2T7C914 | 1e-162 | A0A2T7C914_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib02672.1.p | 1e-157 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13896 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 3e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG241000.1.p |