PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG240900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 299aa    MW: 32225.2 Da    PI: 5.2035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG240900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-09134176454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h ++Er+RR+++ + f++L +++P          +K+++L  +++Y+++L
  Pavir.9KG240900.1.p 134 EHVIAERKRREKMHHQFATLASIIPDI--------TKVSVLGSTIDYLHYL 176
                          5999**********************6........6*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-12128189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.388130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-12134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6134176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.41E-9135181No hitNo description
SMARTSM003536.9E-9136182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.897230298IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDSSASQWLA ELENDDVGGL ELIDPLSMQE LAESLANELW NEPPQEQQQE RHDQPQQCIP  60
SPAGFSFVGD LHLNNADGSC PIVVSAGGSD NDMISFTAGS PVATGSIVGK CCSSSTTEKK  120
ISSGGRKPGS SVKEHVIAER KRREKMHHQF ATLASIIPDI TKVSVLGSTI DYLHYLRSRL  180
KTLQEQNQHS RGSSSDESLT TLNARCCIAS EADGAASPKI DADVQGTTVL LRVVCREKKG  240
VLIRVLTELE KHRLTIINTN VVPFAESSLN ITITAQIEDG SSTTVELVNN LNSALKRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143ERKRRE
2139144RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG240900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685471.11e-162transcription factor bHLH19-like
TrEMBLA0A3L6TER31e-170A0A3L6TER3_PANMI; Uncharacterized protein
STRINGPavir.Ib02673.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.18e-31bHLH family protein