PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG239900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 245aa MW: 27069.7 Da PI: 8.5972 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 95 | 149 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Pavir.9KG239900.1.p 95 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 149 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.3 | 5.5e-40 | 95 | 183 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr + Pavir.9KG239900.1.p 95 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-T 183 69*************************************************************************************9.3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-19 | 83 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.184 | 91 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 93 | 155 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 93 | 154 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.8E-16 | 95 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.31E-16 | 95 | 152 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 126 | 149 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.1E-19 | 151 | 194 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.0E-9 | 151 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEQEEVGLAL GLSLGSGHHQ LKEQPSPSSH SCTLLEPSLS LRLPAKDSPA ARVRIAAVKR 60 ELRMEEDDEA TDRALYSVAS SALVAPDDDE GCNSRKKLRL TKEQSALLED RFKEHSTLNP 120 KQKAALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCELL KRCCETLTEE NRRLHRELQQ 180 LRTLNHPHTA AFFMPAATLS ICPSCERLTG APATTTTNGA DRPKASGPGR ATHLFNPFAN 240 SAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 99 | SRKKLRL |
2 | 143 | 151 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.21685 | 1e-130 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG239900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798038.1 | 1e-150 | homeobox-leucine zipper protein HOX15-like | ||||
Swissprot | Q7G737 | 3e-88 | HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15 | ||||
TrEMBL | A0A3L6TNF2 | 1e-155 | A0A3L6TNF2_PANMI; Homeobox-leucine zipper protein HOX15-like | ||||
STRING | Pavir.Ib02193.1.p | 1e-177 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-66 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG239900.1.p |
Publications ? help Back to Top | |||
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