PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG234200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 375aa    MW: 42035.2 Da    PI: 10.2122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG234200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-084274337
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                          WT +E   +++a +++G++ Wk+I++ +g ++++
  Pavir.9KG234200.1.p 42 TWTNDELMCFYKAYHRHGKD-WKKISAAVG-HKSP 74
                         5*****************99.*********.8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-93885IPR009057Homeodomain-like
PROSITE profilePS512939.2593889IPR017884SANT domain
PfamPF002493.1E-74275IPR001005SANT/Myb domain
CDDcd001673.05E-54274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDPVKVCRKI NKIRIKGYED LQQHRDVPSS AKKRKISDLG ATWTNDELMC FYKAYHRHGK  60
DWKKISAAVG HKSPDVVKVL YALHRTFLSL PKHQATSMGF IALVAGHRNV LELPPSHRGN  120
GQTIRASGKA KKHGKATQHK IHGVPHPHDS YDAWTIPGFS PSFKKRYYGE LARNSQSHSV  180
GNRTPRIPVI VPADRNASDD STPELKNATS STKTNNEKID NDSANFSMNE CSHDGRSGIM  240
EAIKGVECQS FLESKGTGGT EACQTPQPLK KRRMNKTMNG GRTSKVGHET MVAVKEGNKP  300
IELLKEQHMF SEFISADDMF ILDVLESLVN APDKMSKLKI NIPSGYLPLQ LLLHFVFHII  360
YYLIHVTHCL RRRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG234200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678605.10.0protein ALWAYS EARLY 1 isoform X1
RefseqXP_022678606.10.0protein ALWAYS EARLY 1 isoform X1
RefseqXP_022678607.10.0protein ALWAYS EARLY 1 isoform X2
TrEMBLA0A2S3IPR30.0A0A2S3IPR3_9POAL; Uncharacterized protein
TrEMBLA0A3L6THJ90.0A0A3L6THJ9_PANMI; Uncharacterized protein
STRINGPavir.Ia02710.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.25e-24DNA binding