PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG230900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 874aa MW: 93701 Da PI: 5.9716 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 131 | 186 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Pavir.9KG230900.1.p 131 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 186 688999***********************************************998 PP | |||||||
2 | START | 127.8 | 1.3e-40 | 355 | 591 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCC CS START 2 laeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv..................dsgealrasgvvdmvlallveelld 67 la +aa+ l ++ a+ep+Wv+ + e ++ ++e +r+s+vv+m++ +lv +ld Pavir.9KG230900.1.p 355 LAATAADTLARMCRAGEPLWVRRRgassevM--------VPDEHARMfswpvdggkqgggstpaaARTEGSRDSAVVIMNSITLVDAFLD 436 5778999999************994444431........333333334555566678899999999************************ PP CGGCT-TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTS CS START 68 dkeqWdetla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssv 142 + +W e ++ ka t++vi+ g g l+lm+ae q++splvp R+++f Ry+ ++g+w +vd + q +ssv Pavir.9KG230900.1.p 437 AN-KWMELFPsivsKARTIQVINHGaasghlgsGSLVLMQAEVQFPSPLVPaREVMFFRYCVHnAEEGTWSVVDFPAEGFQLEALqTSSV 525 **.************************************************************99*********888888877779**** PP EE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 143 vRaellpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 v+++++pSg++i++++ng+s v+wveh+++ g h++++ v sg+a+ga +w + lqrqce+ Pavir.9KG230900.1.p 526 VKCRRRPSGCIIQDMPNGYSSVVWVEHMEMVGEEKplHQVFKDYVASGTAFGATRWISLLQRQCER 591 *****************************98765449***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-21 | 120 | 182 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.96E-19 | 122 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 128 | 188 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 129 | 192 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-18 | 131 | 186 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.87E-19 | 131 | 189 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 163 | 186 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.152 | 345 | 594 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.33E-28 | 348 | 593 | No hit | No description |
SMART | SM00234 | 2.5E-17 | 354 | 591 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-32 | 355 | 591 | IPR002913 | START domain |
CDD | cd08875 | 8.58E-101 | 365 | 590 | No hit | No description |
SuperFamily | SSF55961 | 2.06E-14 | 608 | 851 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 874 aa Download sequence Send to blast |
MFGDCQVLSS MAAMAGASSS ADALFIPNPG ALAGFMSSSA AAAMPFHHFS TASLIPKEEG 60 GIMGALVPVA KDEDMELEMD MELSGGSGGG HLDGLLSFAD DDWPEQKPSG LELQTVDAAG 120 NQQLATNTGK KKRYHRHTAH QIQQMEALFK ECPHPDDKQR LKLSQELGLK PRQVKFWFQN 180 RRTQMKAQQD RADNVLLRAE NESLKADNYR LQAAIRNVVC PTCGHAAVLA EMSFEEQQLR 240 VENARLKDEL DRLACMATRY GGGRQPGMSS SALGCISAPA PHLLMPPLNL DMSVYSRHFT 300 DQSPVMGCGD LIQSVLAPPP SQQITAGAEH HDASPYMGSA MAPVPEQDRQ QVLDLAATAA 360 DTLARMCRAG EPLWVRRRGA SSEVMVPDEH ARMFSWPVDG GKQGGGSTPA AARTEGSRDS 420 AVVIMNSITL VDAFLDANKW MELFPSIVSK ARTIQVINHG AASGHLGSGS LVLMQAEVQF 480 PSPLVPAREV MFFRYCVHNA EEGTWSVVDF PAEGFQLEAL QTSSVVKCRR RPSGCIIQDM 540 PNGYSSVVWV EHMEMVGEEK PLHQVFKDYV ASGTAFGATR WISLLQRQCE RLASELARNI 600 ADPRVIHTPE ARTNMMKLSQ RMITTFCANI SASGSQSWTA LSESTEDTIR VTTRKNTDPG 660 QPSGVILTAV STSWLPFSHQ QVFELLADEQ QRCQLEILSN EGSLHEVAHI ANGSHPRNCI 720 SLLRINAASN SSQNVELLLQ ESSTHPNGGS LVVFGTVDVY AIQVTMSGGD PSYIPLLPLG 780 FAIFPAANPS PAATSESSGN GESSPGNPDV PATGCLLTVG MQVLASAVPS AKLNLSSVTA 840 INSHVCNAIH QITTALKGAG ASRAEPASVG GSN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 399 | 405 | GGKQGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7667 | 0.0 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG230900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798256.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Refseq | XP_025798257.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A3L6THL5 | 0.0 | A0A3L6THL5_PANMI; Homeobox-leucine zipper protein ROC3 | ||||
STRING | Pavir.Ib03079.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7846 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG230900.1.p |