PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG215600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 23825.1 Da PI: 9.3068 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.3 | 2.1e-09 | 124 | 172 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rWT+ E ellv++v ++G g+W+ ++ Rt ++k++w+++l Pavir.9KG215600.1.p 124 SRWTAKEVELLVQGVSKFGVGRWTELKKKYFktSIRTSVHLKDKWRNLL 172 59*************************99998878************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.594 | 118 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-15 | 120 | 199 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-6 | 122 | 174 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-12 | 124 | 173 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.4E-7 | 125 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.20E-20 | 125 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEQTGLFWGP VQEEDQGLDG FLGDLQFSLA SGTACEHQMA TYPARDDDAL FVLQLLEDAD 60 LDEWLSGGLH QSPLGDTLSH HQMLGRKSGR RGMRKRRISP WGTFVFEETT LEGNREYITR 120 KNNSRWTAKE VELLVQGVSK FGVGRWTELK KKYFKTSIRT SVHLKDKWRN LLRAYQENVQ 180 KYTLLDLEPP LVQQIRKLAA KHPYMK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG215600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797447.1 | 1e-128 | uncharacterized protein LOC112877369 | ||||
TrEMBL | A0A2S3ILU9 | 1e-127 | A0A2S3ILU9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01842.1.p | 1e-129 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.2 | 2e-16 | TRF-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG215600.1.p |