PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG215400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 269aa MW: 30453.1 Da PI: 6.3136 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.7e-08 | 125 | 171 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 WT+ E ++lv++v ++G g Wk+ ++ Rt+ ++k++w ++ Pavir.9KG215400.1.p 125 HWTQYEVQQLVNGVSEYGVGKWKAMKEKYFltSIRTPVHLKDKWKNL 171 5***********************9999989988***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.874 | 118 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-13 | 120 | 200 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-4 | 122 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-5 | 125 | 171 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 125 | 173 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.55E-18 | 126 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MEDEMDLEQL WTGPRNEKYL HECLGVAGAF GHYSCQMENQ FHFLNVEDGE SADQETIIDD 60 FDIKDYIDPS MLGCFFPNGS LGHGRRGPPR KSTSVRVVES INHMDLQESS TSGGRKDSTR 120 KNNEHWTQYE VQQLVNGVSE YGVGKWKAMK EKYFLTSIRT PVHLKDKWKN LVKACKKENG 180 RMLLPLDQAL LERIMEIDRS HPYPRQGNSA QEQGNSAQDR LAPPTSPDTS DPYPRQGNSD 240 QDCLAPPTTP ILDPALRWSV VKSRTKKV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG215400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2S3ILW2 | 1e-137 | A0A2S3ILW2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01844.1.p | 2e-65 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 3e-12 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG215400.1.p |