PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG213000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 244aa MW: 28004.3 Da PI: 6.3089 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85 | 7.5e-27 | 89 | 143 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k rl Wt +LH++F+ av++L G++kA+Pk+ile+mkvk Lt+e+++SHLQkYRl+ Pavir.9KG213000.3.p 89 KSRLIWTMQLHRQFIAAVNSL-GADKAVPKKILEIMKVKHLTREQIASHLQKYRLH 143 68*******************.9*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.1E-8 | 1 | 54 | No hit | No description |
PROSITE profile | PS50110 | 14.514 | 1 | 39 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 2.8E-7 | 1 | 70 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS51294 | 11.327 | 84 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.91E-19 | 87 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-27 | 88 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-25 | 89 | 143 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-6 | 94 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSSNGDTSTV MKYITNGASD FLIKPLRIEE LKNIWQHVFR KQIGAEHRMC NNVQHIDQLS 60 FRTTEATATL DSEIRENNGM VTDIQDLRKS RLIWTMQLHR QFIAAVNSLG ADKAVPKKIL 120 EIMKVKHLTR EQIASHLQKY RLHLRNSTQT LHKDDTPSSS SYPNNESSIL RTQLNSSSNS 180 LYFDQDGCME ITDYSLPKDD LSSGSECILG ERNNYSPECF QDFRWDSDKQ GSETTYLWNF 240 EAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 88 | 145 | 4 | 61 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG213000.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797974.1 | 1e-159 | two-component response regulator EHD1-like isoform X1 | ||||
Swissprot | Q7Y0W3 | 1e-91 | EHD1_ORYSI; Two-component response regulator EHD1 | ||||
TrEMBL | A0A3L6TQX9 | 1e-167 | A0A3L6TQX9_PANMI; Uncharacterized protein | ||||
STRING | Si039992m | 1e-147 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 3e-38 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG213000.3.p |