PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG213000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 331aa    MW: 37957.9 Da    PI: 5.2479
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG213000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.31.2e-26176230156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k rl Wt +LH++F+ av++L G++kA+Pk+ile+mkvk Lt+e+++SHLQkYRl+
  Pavir.9KG213000.1.p 176 KSRLIWTMQLHRQFIAAVNSL-GADKAVPKKILEIMKVKHLTREQIASHLQKYRLH 230
                          68*******************.9*******************************97 PP
2Response_reg52.52.7e-18121201109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl++d + + +++++++l k  y +v++  + +ea+  +  +++ +Dli++D+  p+ d l +l+e +++   +p ++++++g+ +++ +
  Pavir.9KG213000.1.p  12 VLVIDNNFSYLKVMEELLIKCSY-KVTTYNNVREAMSFIyaNQQSVDLIICDLFFPTEDTLLILREATSKF-GIPTVIMSSNGDTSTVMK 99 
                          89*********************.*************99545555*********************99988.9***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                          ++  Ga+dfl Kp  +eel +
  Pavir.9KG213000.1.p 100 YITNGASDFLIKPLRIEELKN 120
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.83E-268156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.1E-279134No hitNo description
SMARTSM004485.1E-1210122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.97211126IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-1412120IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.60E-1713126No hitNo description
PROSITE profilePS5129411.327171232IPR017930Myb domain
SuperFamilySSF466891.08E-18174233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-27175233IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-25176230IPR006447Myb domain, plants
PfamPF002494.1E-6181228IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDQELWPSGL GVLVIDNNFS YLKVMEELLI KCSYKVTTYN NVREAMSFIY ANQQSVDLII  60
CDLFFPTEDT LLILREATSK FGIPTVIMSS NGDTSTVMKY ITNGASDFLI KPLRIEELKN  120
IWQHVFRKQI GAEHRMCNNV QHIDQLSFRT TEATATLDSE IRENNGMVTD IQDLRKSRLI  180
WTMQLHRQFI AAVNSLGADK AVPKKILEIM KVKHLTREQI ASHLQKYRLH LRNSTQTLHK  240
DDTPSSSSYP NNESSILRTQ LNSSSNSLYF DQDGCMEITD YSLPKDDLSS GSECILGERN  300
NYSPECFQDF RWDSDKQGSE TTYLWNFEAE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17175232461ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG213000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797974.10.0two-component response regulator EHD1-like isoform X1
SwissprotQ7Y0W31e-141EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A3L6SC360.0A0A3L6SC36_PANMI; Two-component response regulator EHD1-like
STRINGPavir.Ia04737.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-56response regulator 2