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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pavir.9KG187700.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family | NAC | ||||||||
| Protein Properties | Length: 307aa MW: 33552.8 Da PI: 6.5049 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 166 | 1.3e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrF P+deelv++yL++kv++++++ ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+
Pavir.9KG187700.1.p 10 LPPGFRFYPSDEELVCFYLRNKVANQRVPS-GTLVEVDLHAREPWELPDVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDR 98
79*************************999.88***************77777889********************************** PP
NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
v+++ +++lvg++ktLvfy+grap+g+kt Wvmhe+rle
Pavir.9KG187700.1.p 99 VVHEQgTRALVGMRKTLVFYRGRAPNGQKTGWVMHEFRLE 138
***9966677***************************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 1.18E-60 | 8 | 156 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 58.684 | 10 | 156 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.6E-28 | 11 | 137 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 307 aa Download sequence Send to blast |
MGLREMDSAL PPGFRFYPSD EELVCFYLRN KVANQRVPSG TLVEVDLHAR EPWELPDVAK 60 LTAEEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDRVV HEQGTRALVG MRKTLVFYRG 120 RAPNGQKTGW VMHEFRLETP NSTPKEDWVL CRVFSKMKPS SEGEEAGGQI HRYPATDTGA 180 EPSSPPAFLG SLPDPTVTHP ADEFYQQRQA ITTGTQCGSG VGSSGAMLMN LQAMLQLGSF 240 LDYCSPVVHH GVAVGAPHNA GCCGDDAAMA MALGHVGFEE HGMGEVVEME YAQAQAGCGN 300 RGGLYC* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 1e-52 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-52 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-52 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-52 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-52 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-52 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-52 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-52 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-52 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-52 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-52 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-52 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-52 | 1 | 156 | 4 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-52 | 1 | 156 | 4 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pvr.20344 | 0.0 | stem | ||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Pavir.9KG187700.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KC181492 | 2e-75 | KC181492.1 Urochloa ruziziensis clone 214913 microsatellite sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025796946.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
| TrEMBL | A0A2S3ILI1 | 0.0 | A0A2S3ILI1_9POAL; Uncharacterized protein | ||||
| TrEMBL | A0A2T7C5L6 | 0.0 | A0A2T7C5L6_9POAL; Uncharacterized protein | ||||
| STRING | Pavir.Ib03261.1.p | 0.0 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP697 | 38 | 166 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G28530.1 | 8e-80 | NAC domain containing protein 74 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Pavir.9KG187700.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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