PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG184300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 685aa MW: 74634.1 Da PI: 7.409 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 7e-24 | 119 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF Pavir.9KG184300.1.p 119 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL 206 89****************************996555555..8999********************************************* PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 +++ +el+v+++r+ Pavir.9KG184300.1.p 207 --RTEHGELCVGIRRA 220 ..55999*******97 PP | |||||||
2 | Auxin_resp | 118.6 | 4.9e-39 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rW+nS+Wr+L+ Pavir.9KG184300.1.p 275 AASLAAGGQPFEVVYYPRASTPEFVVKAASVQNAMRNQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWSNSPWRLLQ 358 67889999**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-36 | 110 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.29E-29 | 116 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.09E-21 | 118 | 219 | No hit | No description |
Pfam | PF02362 | 4.9E-22 | 119 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-22 | 119 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.929 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.6E-34 | 275 | 358 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.962 | 589 | 667 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MKEAAGDERC LDPQLWHACA GGMVQMPPVR SRVYYFPQGH AEHAHGGGAA ELAAAAGARG 60 LPPLVLCCVA GVRFLADPET DEVFAKIRLV PVPPAEAGFR GPDELGGDPA DAREKLSSFA 120 KTLTQSDANN GGGFSVPRYC AETIFPKLDY RADPPVQTVL AKDVHGEVWK FRHIYRGTPR 180 RHLLTTGWST FVNQKKLVAG DSIVFLRTEH GELCVGIRRA KRVSCGGMEC MSGWNAPGYG 240 AFSAFLKDEE SKMMKGPAGY MRGKGKVKIA DVVEAASLAA GGQPFEVVYY PRASTPEFVV 300 KAASVQNAMR NQWCPGMRFK MAFETEDSSR ISWFMGTISS VQVADPIRWS NSPWRLLQVT 360 WDEPDLLQNV KCVNPWLVEL VSSIPPIHLG PFSPPRKKLR VPQHPDFPFD SQLLNPIFHG 420 NPLGPSNSPI CCFPGNAPAG IQVARHAQFG LPLTDHQLNK LHLGLFQGGG FNRFEAITPQ 480 SHISKGFMIT SAPVKESVSC LLTIGTPHGT EKSDDRKKPH IMLFGKPILT EQQMNSGGSR 540 ETFSPEVTGN SSSDGNAQKT GNVSDGSGSS ICIGFPSQGR EASDLGLEVG HCKVFMESED 600 VGRTIDLSVF GSYEELYGQL ADMFGIEKAE IMSHLRYRDA AGAVKHTGEE PFSDFMKVAR 660 RLTITEGSVE RLQKPLIEYM VERA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-78 | 1 | 383 | 40 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.21172 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG184300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795868.1 | 0.0 | auxin response factor 22-like | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | A0A3L6TKU2 | 0.0 | A0A3L6TKU2_PANMI; Auxin response factor | ||||
STRING | Si034525m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG184300.1.p |
Publications ? help Back to Top | |||
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