PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG182300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 807aa MW: 88681 Da PI: 5.7956 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.6e-19 | 28 | 85 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps ++r++L +++ +++ +q+kvWFqNrR ++k+ Pavir.9KG182300.3.p 28 YVRYTPEQVEALERVYAECPKPSSARRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 85 6789***************************************************996 PP | |||||||
2 | START | 118.8 | 7.7e-38 | 179 | 339 | 49 | 204 |
EEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS CS START 49 rasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqk 135 +a+ v m+ ++ ve+l d++ +W ++++ e+ + g g+++l +++++a+++lvp Rdf+++Ry+ +l++g++v++++S++ Pavir.9KG182300.3.p 179 TAIDWVQMPGMKIVEILKDRP-CWFRDCRGLEVFTMLPAGngGTIELVSMQMYAPTTLVPaRDFWTLRYTTTLEDGSLVVCERSLSGSGG 267 567789999999999999999.*******9999999999999********************************************9877 PP --....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 136 ppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 ++ +++vRae+lpSg+l++++++g+s v +v+h dl++++++++lr+l++s+++ ++k+++a+l++ + Pavir.9KG182300.3.p 268 GQStatAQQFVRAEMLPSGYLVRQCEGGGSIVRIVDHLDLDAWSVPEVLRPLYESSRVVAQKMTTAALRYIR 339 77667799************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-19 | 7 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.58 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-17 | 24 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.31E-17 | 27 | 87 | No hit | No description |
SuperFamily | SSF46689 | 1.28E-16 | 27 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.3E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 4.44E-6 | 79 | 118 | No hit | No description |
SMART | SM00234 | 9.3E-20 | 136 | 341 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.55E-25 | 159 | 344 | No hit | No description |
PROSITE profile | PS50848 | 21.001 | 161 | 350 | IPR002913 | START domain |
Pfam | PF01852 | 3.6E-35 | 180 | 339 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.7E-13 | 190 | 323 | IPR023393 | START-like domain |
Pfam | PF08670 | 1.3E-47 | 663 | 805 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 807 aa Download sequence Send to blast |
MAAAVAMRSG SSDGGGGYDK GGMDTGKYVR YTPEQVEALE RVYAECPKPS SARRQQLLRE 60 CPILSNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL 120 VHENAYMKQQ LQNPSLTNDT SCESHVTTPA NLRDASNPSG LLSIAEETLT EFLSKATGTA 180 IDWVQMPGMK IVEILKDRPC WFRDCRGLEV FTMLPAGNGG TIELVSMQMY APTTLVPARD 240 FWTLRYTTTL EDGSLVVCER SLSGSGGGQS TATAQQFVRA EMLPSGYLVR QCEGGGSIVR 300 IVDHLDLDAW SVPEVLRPLY ESSRVVAQKM TTAALRYIRQ IAQETSGEVV YPLGRQPAVL 360 RTFSQRLSRG FNDAISGFND DGWSVMGGDG IEDVIIACNS KKIKNSSNPA SAFGAPGGII 420 CAKASMLLQG VPPAVLVRFL REHRSEWADY NFDAYSASAL KTSPCSLPGL RPMRFSGSQI 480 VMPLAHTVEN EEILEVVRLE GQALTHDEGV LSREIHLLQL CTGFDEKSMG SCFQLVFAPI 540 DELFPDDAPL ISSGFRVIPL DIKTDGVPSG RTLDLASSLE VGTTAQHASG DGSQDDCNLR 600 SVLTIAFQFP YEIHLQDSVA AVARQYVRSI VSAVQRVSMA ISPSRSGLST GQKIISGFPE 660 AATLVRWICQ SYQYHLGVDL VSHSDEAGES LLRMFWDHQD AVLCCSFKEK PVFTFGNQMG 720 IDMLETTLIA LQDLTLDKIF DEAGRKALHA EIPKLMEQGY AYLPPGVGLS GMGRHVSYEQ 780 AVAWKVLGDD SNVHCLAFCF VNWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2127 | 0.0 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG182300.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796396.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Refseq | XP_025796397.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A2T7C5J0 | 0.0 | A0A2T7C5J0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01697.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG182300.3.p |