PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG182300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 839aa MW: 91872.7 Da PI: 6.0062 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 28 | 85 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps ++r++L +++ +++ +q+kvWFqNrR ++k+ Pavir.9KG182300.1.p 28 YVRYTPEQVEALERVYAECPKPSSARRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 85 6789***************************************************996 PP | |||||||
2 | START | 155.4 | 4.5e-49 | 164 | 371 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ +W ++++ e+ + g g Pavir.9KG182300.1.p 164 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSFGIVTVSHGCRGVAARACGLVNLEPTKIVEILKDRP-CWFRDCRGLEVFTMLPAGngG 252 789*******************************************************9999999999.*******9999999999999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++++a+++lvp Rdf+++Ry+ +l++g++v++++S++ ++ +++vRae+lpSg+l++++++g+s v +v+h dl+++ Pavir.9KG182300.1.p 253 TIELVSMQMYAPTTLVPaRDFWTLRYTTTLEDGSLVVCERSLSGSGGGQStatAQQFVRAEMLPSGYLVRQCEGGGSIVRIVDHLDLDAW 342 *******************************************987777667799*********************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqc 204 +++++lr+l++s+++ ++k+++a+l++ + Pavir.9KG182300.1.p 343 SVPEVLRPLYESSRVVAQKMTTAALRYIR 371 *************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-19 | 7 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.58 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-17 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-16 | 27 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.79E-17 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 2.4E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.76E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 26.686 | 154 | 382 | IPR002913 | START domain |
CDD | cd08875 | 2.14E-68 | 158 | 374 | No hit | No description |
SMART | SM00234 | 6.0E-36 | 163 | 373 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.8E-18 | 163 | 355 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.2E-32 | 163 | 375 | No hit | No description |
Pfam | PF01852 | 7.1E-47 | 164 | 371 | IPR002913 | START domain |
Pfam | PF08670 | 1.4E-47 | 695 | 837 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 839 aa Download sequence Send to blast |
MAAAVAMRSG SSDGGGGYDK GGMDTGKYVR YTPEQVEALE RVYAECPKPS SARRQQLLRE 60 CPILSNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL 120 VHENAYMKQQ LQNPSLTNDT SCESHVTTPA NLRDASNPSG LLSIAEETLT EFLSKATGTA 180 IDWVQMPGMK PGPDSFGIVT VSHGCRGVAA RACGLVNLEP TKIVEILKDR PCWFRDCRGL 240 EVFTMLPAGN GGTIELVSMQ MYAPTTLVPA RDFWTLRYTT TLEDGSLVVC ERSLSGSGGG 300 QSTATAQQFV RAEMLPSGYL VRQCEGGGSI VRIVDHLDLD AWSVPEVLRP LYESSRVVAQ 360 KMTTAALRYI RQIAQETSGE VVYPLGRQPA VLRTFSQRLS RGFNDAISGF NDDGWSVMGG 420 DGIEDVIIAC NSKKIKNSSN PASAFGAPGG IICAKASMLL QGVPPAVLVR FLREHRSEWA 480 DYNFDAYSAS ALKTSPCSLP GLRPMRFSGS QIVMPLAHTV ENEEILEVVR LEGQALTHDE 540 GVLSREIHLL QLCTGFDEKS MGSCFQLVFA PIDELFPDDA PLISSGFRVI PLDIKTDGVP 600 SGRTLDLASS LEVGTTAQHA SGDGSQDDCN LRSVLTIAFQ FPYEIHLQDS VAAVARQYVR 660 SIVSAVQRVS MAISPSRSGL STGQKIISGF PEAATLVRWI CQSYQYHLGV DLVSHSDEAG 720 ESLLRMFWDH QDAVLCCSFK EKPVFTFGNQ MGIDMLETTL IALQDLTLDK IFDEAGRKAL 780 HAEIPKLMEQ GYAYLPPGVG LSGMGRHVSY EQAVAWKVLG DDSNVHCLAF CFVNWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2127 | 0.0 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG182300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796396.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Refseq | XP_025796397.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A2T7C5J0 | 0.0 | A0A2T7C5J0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01697.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG182300.1.p |