PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG136200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 267aa MW: 29262.7 Da PI: 9.1351

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG136200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.4e-15	7	55	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+++ ++++G g +W + a+t+g++R++ +c+srw++yl Pavir.9KG136200.1.p 7 KGKWSKEEDNLIKNHIEKYGIGrSWQALANTLGLRRCGRSCRSRWLNYL 55 79****************999**********************97 PP
2	Myb_DNA-binding	28.9	2.7e-09	62	105	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T+ E+ ++ d + G+ W+ a+++ gRt+ +k++w++ Pavir.9KG136200.1.p 62 GNFTPAEERIICDMYSKIGSC-WSVMAAKLL-GRTDLAIKNYWNST 105 89*****************.****9.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.499	2	59	IPR017930	Myb domain
SuperFamily	SSF46689	1.45E-24	6	102	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-11	6	57	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-13	7	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-20	8	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.163	60	110	IPR017930	Myb domain
SMART	SM00717	3.4E-9	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-7	62	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-19	63	109	IPR009057	Homeodomain-like
CDD	cd00167	2.87E-6	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MRKMLKKGKW SKEEDNLIKN HIEKYGIGRS WQALANTLGL RRCGRSCRSR WLNYLRPGLK 60 HGNFTPAEER IICDMYSKIG SCWSVMAAKL LGRTDLAIKN YWNSTLKKKF PAARPSAAAA 120 FRRRNCPACS TSSDAGTPAR DLQLVSYSSE ESSTPGSSPA WPVLAGPTPV QAVQQPVPVV 180 AAQPIAAVPI SGPMKIEQKH AVVSLPHLGT PPPPPPRACD QTGESVMDIV CAPMSPVPQS 240 IMEPDELACI YQFDDIDSFL PWFDHH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-23	5	110	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG136200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079888	5e-32	AC079888.10 Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence.
GenBank	AP014966	5e-32	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	5e-32	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661280.1	1e-138	transcription factor RAX2
TrEMBL	A0A2S3ILL5	1e-148	A0A2S3ILL5_9POAL; Uncharacterized protein
STRING	Pavir.Ib03599.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12228	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	3e-31	myb domain protein 87

Link Out ? help Back to Top
Phytozome	Pavir.9KG136200.1.p