PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG117000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 459aa    MW: 49197.7 Da    PI: 6.3268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG117000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-164693148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WTt Ed  lvd v+++G g+W+++ r  g+ R++k+c++rw ++l
  Pavir.9KG117000.1.p 46 KGPWTTAEDAMLVDHVRRHGEGNWNAVQRLTGLLRCGKSCRLRWTNHL 93
                         79******************************99***********996 PP
2Myb_DNA-binding50.16.5e-1699142146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g+++++E+ l++++++qlG++ W++ a++++ gRt++++k++w++
  Pavir.9KG117000.1.p  99 KGSFSPDEEILIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 142
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3054193IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-204496IPR009057Homeodomain-like
SMARTSM007172.1E-134595IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-2845140IPR009057Homeodomain-like
PfamPF002495.5E-144693IPR001005SANT/Myb domain
CDDcd001671.23E-104893No hitNo description
PROSITE patternPS0017506170IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129422.51394148IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2497147IPR009057Homeodomain-like
SMARTSM007172.4E-1498146IPR001005SANT/Myb domain
PfamPF002497.3E-1599142IPR001005SANT/Myb domain
CDDcd001671.12E-10101142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MERSPGAALT SSPEEEEEEK AADGHGEEAG VEQEDEEEAA PVVLKKGPWT TAEDAMLVDH  60
VRRHGEGNWN AVQRLTGLLR CGKSCRLRWT NHLRPNLKKG SFSPDEEILI AQLHAQLGNK  120
WARMAAHLPG RTDNEIKNYW NTRTKRRQRA GLPVYPPEVQ LQLALAKRCR YDDLSPLPGA  180
ANAVQALDAA AAGYTSSRPA PLDLARQLAA TSQAAQFLSP PPPFSAPSSP WAKPFARNAL  240
YFQFAHSSPV SPSKPTRPLH HPATPDLSLG YGVRGADQSR LAPLSPSPGR PRVELPSNQF  300
GQAMPPTSAA AAAGAALPDH HQHQNAASLE KMLQELHDAI KVDPPANGDA ERHGGGGAVL  360
ERHGGRENKL DGQHRDDDMG TLFDMMIPRL NAPETVPLPP AAASPNHSGS TSQHSSDDQD  420
PSTADLGVDL PVAGGASPPD QDWGLDGVCQ WSNMSRIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-284414725127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG117000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425370.0BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275320.0KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982528.10.0myb-related protein P
TrEMBLA0A2S3IL200.0A0A2S3IL20_9POAL; Uncharacterized protein
STRINGPavir.Ib03827.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.29e-67myb domain protein 101