PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG108100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 322aa    MW: 36055.9 Da    PI: 8.4869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG108100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000341030323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+ksF++ ++L  H+++H
  Pavir.9KG108100.1.p 10 CNVCKKSFPSYHSLGGHMNLH 30
                         *******************99 PP
2zf-C2H216.91.8e-0584105223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C+ C k+F +++ L +H+r H
  Pavir.9KG108100.1.p  84 ECQLCFKVFASNHALSVHMRAH 105
                          6*******************99 PP
3zf-C2H216.81.9e-05227249123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cgk+F+++  L +H + H
  Pavir.9KG108100.1.p 227 HDCKLCGKVFTSSKGLASHKKFH 249
                          56******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.89E-7630No hitNo description
PROSITE profilePS501579.64835IPR007087Zinc finger, C2H2
SMARTSM003554.3830IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-7831IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576671.89E-778105No hitNo description
PROSITE profilePS5015710.34683110IPR007087Zinc finger, C2H2
SMARTSM003550.1283105IPR015880Zinc finger, C2H2-like
PfamPF138943.2E-484105No hitNo description
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SuperFamilySSF576677.66E-5225250No hitNo description
Gene3DG3DSA:3.30.160.605.9E-4227249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845227249IPR007087Zinc finger, C2H2
SMARTSM003550.033227249IPR015880Zinc finger, C2H2-like
PfamPF139120.0056227249IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MPPTGRKHWC NVCKKSFPSY HSLGGHMNLH RVKRKQKKQA RSTLSLPNIG DGFRGYGLRE  60
RRHCTWLLCD SSDDEYLTMA PKTECQLCFK VFASNHALSV HMRAHARHER KMVAEEVSRE  120
SNGHSDHKVV VSTPVMLTYG IEEVNAARVL LMISGYSGVD SASEHCDEDY EMDGNSAYHV  180
QKSEMELDYF CHGKTGDAEL MMPESPSSDV KLKFTSLSQV LKATESHDCK LCGKVFTSSK  240
GLASHKKFHK VPDHEKVAAS PNSAVSQTGQ QLLEVDSRLL CLNLNLPGFS DRNYRSRSAK  300
SAETPWWTTS AFRSERMLGI V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG108100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796823.10.0uncharacterized protein LOC112876858
RefseqXP_025796824.10.0uncharacterized protein LOC112876858
TrEMBLA0A2S3IK940.0A0A2S3IK94_9POAL; Uncharacterized protein
STRINGPavir.Ib03920.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.15e-08C2H2 family protein