PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG105000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 386aa    MW: 43518 Da    PI: 9.0736
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG105000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13110153347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT e+d++l ++++ +G++ W+ Iar++   +t+kqc++rw + 
  Pavir.9KG105000.1.p 110 KWTYEDDKKLRELIECHGNRAWSIIAREFS-SKTGKQCRERWVNN 153
                          8*****************************.***********986 PP
2Myb_DNA-binding50.25.9e-16160202145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r +WT+ E +llv+++k+lG++ W++Iar+++ gR+++++k+ w+
  Pavir.9KG105000.1.p 160 RTAWTEAELLLLVECHKKLGKK-WSKIARKIP-GRSENSIKNQWY 202
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.358103154IPR017930Myb domain
SuperFamilySSF466893.91E-25107201IPR009057Homeodomain-like
SMARTSM007176.1E-10107156IPR001005SANT/Myb domain
CDDcd001677.16E-11110153No hitNo description
Gene3DG3DSA:1.10.10.601.8E-19110160IPR009057Homeodomain-like
PfamPF139212.1E-14111167No hitNo description
PROSITE profilePS5129420.689155209IPR017930Myb domain
SMARTSM007171.9E-14159207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-16161205IPR009057Homeodomain-like
CDDcd001671.33E-11162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAVRMGEKRS MFHKMFEKEY QYALGQQDVD TMHGTLAREV VGQAINFGVG DYGTPWQGAL  60
GFTGHWGDPI QEAPIGEYYG QMIGSMALHN EVGKAYAGTS SVVNNAIGRK WTYEDDKKLR  120
ELIECHGNRA WSIIAREFSS KTGKQCRERW VNNRDPKIKR TAWTEAELLL LVECHKKLGK  180
KWSKIARKIP GRSENSIKNQ WYAAKRSLKA KRKNIKKDDR PGIIEDYMRT LKKKGKNMVN  240
EVTVPFRGSN FAASSQVPES SDNPLPPPPM SAPFLGLNVN VGDHFTPEAM YDDPIFTDKH  300
QPFAYPQDTE ESGYLPSPYV LVAGHPFAED HQAGGYHSQL QFHQLPTSVQ QEQAFSNYRA  360
TEDPNQVFAG RYFHEAIRGQ QSGDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2711120110100B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG105000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704394.11e-143transcription factor MYB62-like
TrEMBLA0A3L6THU60.0A0A3L6THU6_PANMI; Uncharacterized protein
STRINGPavir.Ib03926.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3220534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-35myb domain protein 119