PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG104000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 24656.8 Da PI: 7.1744 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.8 | 9.2e-30 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g+++++++ Pavir.9KG104000.1.p 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNW 91 6*********************9999888899********************************************************** PP DUF260 86 qleqlkaelallke 99 +l+q++a+++l++e Pavir.9KG104000.1.p 92 DLCQAAADAVLRGE 105 *******9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.729 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGESLRAL SAIPAAFTDR 120 DMDGLYGSVG AAASSSSPEN SSSAPSRKRG RNNNNGGLAF VNAAAAAAVP AAGACQNPPA 180 GLLQSCELDL CLTPASSPMA GSGRRGCGGA SDEYSATTTC EDLQATGDVE ARAPALLNLF 240 H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG104000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288002 | 1e-161 | AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982442.1 | 1e-129 | LOB domain-containing protein 37 | ||||
TrEMBL | A0A3L6TGQ7 | 1e-146 | A0A3L6TGQ7_PANMI; LOB domain-containing protein 37-like | ||||
STRING | Pavir.J16587.1.p | 1e-173 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8450 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 7e-56 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG104000.1.p |