PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG102100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 324aa    MW: 35224.3 Da    PI: 4.8352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG102100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.5e-102432831055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Pavir.9KG102100.1.p 243 KKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 283
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.44E-12231287No hitNo description
SuperFamilySSF474591.57E-14231299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-13233296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7243283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MESGGVIAEA GWSVVGMPSQ AEESEIMEQL LGTFPSNCEE GDQELPWSIQ ASSAFYSHCN  60
ASSSTYSSTN SDSSGSPTFV VPSEYGGYYL SNSNKALDLN FCTAPMYLHM AQEQVAAQFV  120
DTILNPLYGS SDSSCEDLGD SGMNLLDSIG GSVKRKHLEQ GKLDAPTRSR KCARKSDSKR  180
VKKTMPRELQ DGGVAAANGH SSSCCTFEND SNAFRGPPVA ANLNGKVQAD RRSATESQSL  240
YAKKRRERIN ERLRILQNLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDEMWMYAPI  300
AYNGMNIGID LNLSQVSALI DNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG102100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797849.10.0transcription factor bHLH139-like
TrEMBLA0A2S3IKN80.0A0A2S3IKN8_9POAL; Uncharacterized protein
STRINGPavir.Ib03951.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-39bHLH family protein