PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG099900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 818aa    MW: 91594.6 Da    PI: 8.6136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG099900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.7e-147468143099
                          ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                          +++++tl+l+   g++We k+ + +++++ ++ +GW +F++ ngL++gD+++F+l+++ ++ ++ v ++rk
  Pavir.9KG099900.1.p 746 PTKGQTLVLQ-CGGKTWEAKMMFHNGRRW-FINGGWPNFARGNGLRVGDICLFELKKKeKKLTMAVYIIRK 814
                          3455566655.59********99888877.5899**********************888999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-6254IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.0E-6257IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS013590550IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.102.5E-14513620IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-13514619IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-14521618No hitNo description
SMARTSM010190.13521621IPR003340B3 DNA binding domain
PROSITE profilePS5086310.179522621IPR003340B3 DNA binding domain
PfamPF023622.1E-7537617IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-20709814IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-17710814IPR015300DNA-binding pseudobarrel domain
CDDcd100176.96E-15715813No hitNo description
SMARTSM010193.0E-6717815IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548719815IPR003340B3 DNA binding domain
PfamPF023621.5E-12736814IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MDIVCEVCGD IGFRHLLLCC RDCKCSAVHQ YCLEKVVFDA SLIEWFCYEC LQKRSENTCV  60
GSLEKVPSER PPSHAHFGSI VHQPVTKRVE STRDSGPWKN RKSKSFMTIY ASLNKKYSSQ  120
KKRTKNKSNM RKICNCTNRG RIDKMFADTS AKASYSCEII ETESAKSNNG NNQQVDHENS  180
GTLNIKQPSP LIVNCLGTSG DTDQSHMLET MEELARTSKK TPKILTAAFK GLVMNRENVV  240
LGSNKLGSSC STAELGNLAL EKSRDKSNSM KDSGGNHGNQ TNQHASVFCK NMEAKSVKDK  300
ETVVAADQNK YGAVGLLRNS MDKSEVHGDS NSNSNSNSNI IDGLMPEREK EEVRFQLDYR  360
AKYELPQRSM AADVPQLPTL QNDAADKVTP YSPNDGCEEV FSCHGIKNIP SVRERSVDSV  420
DISSISQHDT TEASERSERL TEHQKGSSRR RGKTLKMAAA SSSSEESGED IPSENLSLES  480
DDLRSSLGAD YVLSYRTYLS KAQKGRVMKL IKEIQPEFTA YIATMRKTSV QPPGPYLGIT  540
KEYALAHFPD KSTSVTLEMP GKSKKWHPKF YKRNESRKNF LMGQWLDFIC DNHVQEGDIV  600
LLLPTKGGRR STFTVYVLHE TATHSRSRAG FQRVGSCTDG PITKMASEVH IEEEPTTGDH  660
ISQESDMHEI SHESLESEDS DPFQPPYFVP CKSPLSKSQK RIVEERVRAI RSETPLCVAV  720
MKNNNVGVAQ RWMLELGSRY ASVYLPTKGQ TLVLQCGGKT WEAKMMFHNG RRWFINGGWP  780
NFARGNGLRV GDICLFELKK KEKKLTMAVY IIRKEQF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.306390.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG099900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797622.10.0B3 domain-containing protein Os03g0619800-like
TrEMBLA0A2T8I1F40.0A0A2T8I1F4_9POAL; Uncharacterized protein
STRINGPavir.Ib03962.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172