PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9KG095700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 152aa MW: 17319.1 Da PI: 10.4687 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.1 | 3.6e-14 | 59 | 145 | 8 | 98 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 s+ + + l++pk+++++h g k++ ++ +++++++e kli+ + + + ++GW++Fvkan++++g ++vF+l ++ ++ +++v++ Pavir.9KG095700.1.p 59 SNIHGRFDLIFPKQYIARHLGWKKR---TIFLQRESQRYEAKLIIGNV--ARLTKGGWRRFVKANDVDVGNICVFELLKEgDTCTMNVHI 143 555667789**********545333...4566778999*****55333..346789********************99887888999999 PP E- CS B3 97 fr 98 +r Pavir.9KG095700.1.p 144 IR 145 87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-16 | 45 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-16 | 47 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-13 | 50 | 145 | No hit | No description |
PROSITE profile | PS50863 | 9.77 | 52 | 147 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.2E-5 | 56 | 147 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-12 | 58 | 145 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 152 aa Download sequence Send to blast |
MAGNSLLSDN NGVQLRDQHR PYAISQKYRL NENQKKKIDE RLKCMNSGAP ISVAVICKSN 60 IHGRFDLIFP KQYIARHLGW KKRTIFLQRE SQRYEAKLII GNVARLTKGG WRRFVKANDV 120 DVGNICVFEL LKEGDTCTMN VHIIRSFEVA G* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9KG095700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368SHE1 | 1e-38 | A0A368SHE1_SETIT; Uncharacterized protein | ||||
TrEMBL | K4ALK6 | 6e-40 | K4ALK6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J26924.1.p | 1e-107 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12482 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-07 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9KG095700.1.p |