PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG090700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 351aa MW: 38898 Da PI: 7.8043

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG090700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	110.1	1.1e-34	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFv+av+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl Pavir.9KG090700.1.p 47 KPRLKWTPELHERFVDAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.956	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-33	45	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-18	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-24	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-10	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-25	149	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MYHHQQQLHS HSHFLSSRQT FPPERHLLLQ GGSIPAEPGL VLSTDAKPRL KWTPELHERF 60 VDAVNQLGGP DKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNVHAKAN GGNAKNVVGY 120 TMAMEKPPEG NGSPASHLNL GTQTNKSVHI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA 180 QGKYLQSVLE KAQDTLAKQN TGSVGLETAK MQLSELVSKV STECLQHTFT GFEMEGSQMA 240 QGHTMQLGDG SVDSCLTACD GSQKDQDILS ISLSAHRGKE IGGMGFDIQA KERGSEDLFL 300 DKLSRTPPSH QERRERDSFI MAAKLDLNIN DTNDGPQNCK KFDLNGFNWT *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MYHHQQQLHS HSHFLSSRQT FPPERHLLLQ GGSIPAEPGL VLSTDAKPRL KWTPELHERF  60
VDAVNQLGGP DKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNVHAKAN GGNAKNVVGY  120
TMAMEKPPEG NGSPASHLNL GTQTNKSVHI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA  180
QGKYLQSVLE KAQDTLAKQN TGSVGLETAK MQLSELVSKV STECLQHTFT GFEMEGSQMA  240
QGHTMQLGDG SVDSCLTACD GSQKDQDILS ISLSAHRGKE IGGMGFDIQA KERGSEDLFL  300
DKLSRTPPSH QERRERDSFI MAAKLDLNIN DTNDGPQNCK KFDLNGFNWT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20406	9e-78	callus\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG090700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU943712	0.0	EU943712.1 Zea mays clone 1680873 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796515.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-100	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2T7CD66	0.0	A0A2T7CD66_9POAL; Uncharacterized protein
STRING	Pavir.Ib01520.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-103	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG090700.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]