PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG082400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 94aa MW: 10326.6 Da PI: 10.0313 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.8 | 2.2e-23 | 3 | 60 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC ++ C +kkkve +dp+ ++ ++Yeg H+h Pavir.9KG082400.2.p 3 EDGYEWKKYGQKFIKNIQKIRSYFRCRHRLCGAKKKVEWHPSDPSgALRVVYEGAHQH 60 7******************************************985789********* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.498 | 1 | 63 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-21 | 2 | 63 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-25 | 2 | 62 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.1E-24 | 2 | 63 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-21 | 3 | 60 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MPEDGYEWKK YGQKFIKNIQ KIRSYFRCRH RLCGAKKKVE WHPSDPSGAL RVVYEGAHQH 60 GSPPSSSAAA DAAAGASNKY ELGAQYFGGA RPQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG082400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970633 | 3e-74 | EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982253.1 | 5e-53 | probable WRKY transcription factor 33 | ||||
TrEMBL | A0A3L6S831 | 3e-58 | A0A3L6S831_PANMI; Putative WRKY transcription factor 33 | ||||
STRING | Si038001m | 2e-52 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 5e-15 | WRKY DNA-binding protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG082400.2.p |