PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG081700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 401aa    MW: 42956.2 Da    PI: 10.0196
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG081700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-31112165255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pavir.9KG081700.1.p 112 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 165
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-28109165IPR009057Homeodomain-like
SuperFamilySSF466892.33E-15109165IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-23112165IPR006447Myb domain, plants
PfamPF002493.3E-7113164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAATAAATDL SLHISPPWPA ADAGRSSGGE ACHETQGFFA KPKLLCLGLE TATATEQDDQ  60
CDLQLQQQLH QPSQIQRFKK SSSSSAALSG GTTTRSGNNG SGGGGKRSSR APRMRWTTAL  120
HAHFVHAVEL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKGTT ADRSCAAGHH  180
VQMRDMGFLQ RACELNGFEA FNHSTLNTRM LASSAAGSSS LPAGKQEVAW CLRPPLAHQS  240
ELPLPLPCPY LMSAHHNRYL LSQDHHHQGW RRGAQQEAAS RVLGHQDDTT ARRLHAGRAG  300
DAAIRRSSWS AAGVASRSSS LSATAPLPST GGTRRSSSTE QACWMMNKQQ QQAPSSRAIA  360
APNLEISLGR QGWQLNLQDQ QQRGGEPAAA AKELTLLKCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-16113167357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-16113167357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-16113167357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-16113167357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG081700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9444001e-126EU944400.1 Zea mays clone 217622 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982402.11e-175uncharacterized protein LOC101779847
TrEMBLA0A368SHH61e-174A0A368SHH6_SETIT; Uncharacterized protein
STRINGPavir.Ib04058.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-32G2-like family protein