PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG076400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 507aa    MW: 52177.5 Da    PI: 6.5791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG076400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16311357455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka+ L +A+eY+ksLq
  Pavir.9KG076400.1.p 311 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASLLDEAIEYLKSLQ 357
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-20305369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.209307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-17310361No hitNo description
PfamPF000109.5E-14311357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-20311365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-17313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGDTSRPLGD DDDLIELLWC NGHVVMQSQN NRKLPPPRPE KPAGAAAPAP APAAQDDEAG  60
LWFPFALADS LDKDIFSEFF CEAPAPAAAA APVPATPGVE DGKPCRDVPV EDDDRRGGAC  120
AASGASSDLM PPPKSAPVSG SRQQTSLADG GDNAGDLSDL VRAGSAGKVA AEAGASSMRS  180
AIGSSICGSN QVLVQRAACR ASGAACGGGG GCSGSALPSA MGSANANASG RGNEATVASS  240
SGRSNYCFGT TTTTTTTEPT SNSNWSSKRK RLDTEDSENP SEDAESESAA MLARKPPQKL  300
TAARRSRAAE VHNLSERRRR DRINEKMRAL QELIPHCNKT DKASLLDEAI EYLKSLQLQL  360
QMMWMGSGIA APPVMFPGVH QYLPRMGVGM GAAAMPSMPR MPFLPPQPVV PNAPVHNPVP  420
LSPAAYRGHM PAVGITEPYA HYLGVNHLQP TPSQHFAQGA VGYYPLGAKA AAVQQSPALH  480
HVPGGGGAAA VPGVLPPESA PSRGPG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315320ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.419981e-163leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG076400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566450.0EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794697.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A2T7C3N40.0A0A2T7C3N4_9POAL; Uncharacterized protein
STRINGPavir.Ib04022.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-37phytochrome interacting factor 3