PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG076000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 403aa    MW: 43219.2 Da    PI: 6.0033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG076000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-1955101148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+WT+eEde l+  v+ +G + W++Iar+++ gR +kqc++rw ++l
  Pavir.9KG076000.2.p  55 RGPWTEEEDEMLKAMVEVYGDRKWAAIARHLP-GRIGKQCRERWTNHL 101
                          89******************************.************996 PP
2Myb_DNA-binding53.65.1e-17109151145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++ WT+e+d  l++a+k +G++ W+ Iart+  gR+++++k++w+
  Pavir.9KG076000.2.p 109 KNTWTEEDDMNLIEAHKVHGNR-WSMIARTLE-GRSENSVKNHWN 151
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.42750105IPR017930Myb domain
SMARTSM007175.4E-1954103IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-3054150IPR009057Homeodomain-like
PfamPF002491.9E-1755101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2355103IPR009057Homeodomain-like
CDDcd001672.80E-1757101No hitNo description
PROSITE profilePS5129419.119106158IPR017930Myb domain
SMARTSM007174.4E-14108156IPR001005SANT/Myb domain
PfamPF002491.8E-13109151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-15111152IPR009057Homeodomain-like
CDDcd001678.58E-12111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MLAPGGNIVQ PEGYLAPAPS SLHAAWNGVA AAAGGQQQHL PAGAGSGVLR LPPVRGPWTE  60
EEDEMLKAMV EVYGDRKWAA IARHLPGRIG KQCRERWTNH LRPEIDKAKN TWTEEDDMNL  120
IEAHKVHGNR WSMIARTLEG RSENSVKNHW NATKRSLKAK RRLKKKKNAE APPGQQWSIL  180
EEYIRSLRPD ELAAAPPAPS DDSPPSSYNV GYDGEVVSPP AAPAPAPGGG FDPAALRLYL  240
SAAAAGNSSS AVNNQLAAMN PNMAAPPPYL GLDLNAYYYG APLQQQAPPQ MMMMMSQYQQ  300
QAAADNRSTY PFVDHLAWHS PVPNADAYAT SSNANAAAGQ HYYYNYNSDA GAGPSPAPAP  360
APAPTATAAN PEDDVDVVQM ASREFQLNTS DEEVTLNLAG FV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39541536103B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG076000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791584.11e-172transcription factor CSA-like
TrEMBLA0A3L6TP141e-175A0A3L6TP14_PANMI; Uncharacterized protein
STRINGPavir.Ib04086.1.p1e-163(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-38myb domain protein 98