PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG075900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LSD | ||||||||
Protein Properties | Length: 176aa MW: 18329.2 Da PI: 8.4401 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.5 | 9.5e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+ Crt+L YPrGApsV+Ca+C++V Pavir.9KG075900.1.p 7 CHACRTVLLYPRGAPSVCCAVCQAV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 39.9 | 6.7e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r A VRC++C+tV Pavir.9KG075900.1.p 46 CGGCRTLLMYTRSADTVRCSCCNTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 48 | 2e-15 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA sV+Ca+C+++ Pavir.9KG075900.1.p 84 CGHCQTTLMYPYGAHSVKCAICNHI 108 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.2E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.5E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.3E-15 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.9E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.2E-11 | 81 | 109 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MQSQIVCHAC RTVLLYPRGA PSVCCAVCQA VTTVPPPGLE MAQLICGGCR TLLMYTRSAD 60 TVRCSCCNTV NLVRPVNNIA HVNCGHCQTT LMYPYGAHSV KCAICNHITT TGVNTVAPTP 120 SARPASNGSS YSTSSTSAPK SQPQNVTVVV ENPMTVDDKG KLVSNVVVGV TTGKN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6444 | 0.0 | callus| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG075900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976486 | 0.0 | EU976486.1 Zea mays clone 895962 zinc finger protein LSD2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796943.1 | 1e-121 | protein LOL3-like | ||||
Swissprot | Q6ASS2 | 5e-96 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A3L6S9J3 | 1e-120 | A0A3L6S9J3_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ib04023.1.p | 1e-122 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-49 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG075900.1.p |
Publications ? help Back to Top | |||
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