PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG074600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 857aa MW: 93095.9 Da PI: 6.5847 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 30 | 87 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Pavir.9KG074600.1.p 30 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87 6789****************************************************97 PP | |||||||
2 | START | 171.8 | 4.4e-54 | 178 | 385 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l vi g g Pavir.9KG074600.1.p 178 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPMGngG 266 68999*****************************************************.8888888888***************99999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ ++++vRae+lpSg+li+p+++g+s +++v+hvdl+++ Pavir.9KG074600.1.p 267 TIELIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAW 356 ***************999****************************9999999************************************* PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqc 204 +++++lr+l++s + ++kt+ a+l++ + Pavir.9KG074600.1.p 357 SVPEVLRPLYESPKILAQKTTIAALRHIR 385 ************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.435 | 24 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-15 | 26 | 92 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-17 | 28 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.04E-16 | 29 | 89 | No hit | No description |
Pfam | PF00046 | 5.1E-16 | 30 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 31 | 87 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.82E-6 | 81 | 120 | No hit | No description |
PROSITE profile | PS50848 | 26.907 | 168 | 368 | IPR002913 | START domain |
CDD | cd08875 | 5.24E-69 | 172 | 388 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.7E-24 | 176 | 360 | IPR023393 | START-like domain |
SMART | SM00234 | 6.2E-46 | 177 | 387 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.07E-38 | 178 | 388 | No hit | No description |
Pfam | PF01852 | 7.6E-52 | 178 | 385 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.52E-5 | 425 | 509 | No hit | No description |
SuperFamily | SSF55961 | 8.52E-5 | 539 | 612 | No hit | No description |
Pfam | PF08670 | 1.8E-50 | 713 | 855 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence Send to blast |
MAAAMVVGGA GKDRSSPGGG GAPQVDTGKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI 60 RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS 120 RLVYENGYMK QQLHNPSVAT TDTSCESVVT SGQHHQQQNA AAPRPQRDAN NPAGLLAIAE 180 ETLAEFLSKA TGTAVDWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI 240 LKDRPSWYRD CRCVDILHVI PMGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS 300 LVICERSLTQ STGGPSGPNT PNFVRAEVLP SGYLIRPCEG GGSMIHIVDH VDLDAWSVPE 360 VLRPLYESPK ILAQKTTIAA LRHIRQIAHE SSGEMPYGGG RQPAVLRTFS QRLSRGFNDA 420 VNGFPDDGWS LMSSDGSEDV TIAINSSPNK LVGSHVNSSQ LFSAIGGGIL CAKASMLLQN 480 VPPALLVRFL REHRSEWADP GIDAYSAAAL RASPYAVPGL RASGFMGSQV ILPLAHTLEH 540 EEFLEVIRLE GHSLCHDEVV LSRDMYLLQL CSGVDENAAG ACAQLVFAPI DESFADDAPL 600 LPSGFRVIPL DAKTDPPSGT RTLDLASTLE VGSGGTTRAS SDASSTCNTR SVLTIAFQFS 660 YENHLRESVA AMARQYVRTV VASVQRVAMA IAPSRLGGQL EMKQTPGSPE AHTLARWIGR 720 SYRFHTGAEL LRADTQCTDA SLKALWQHSD SIMCCSLKAA PVFTFANQAG LDMLETTLIA 780 LQDISLEKIL DDDGRKALCT EYPKIMQQGF AYLPGGVCVS SMGRPVSYEQ AVAWKVLSDD 840 DTPHCLAFMF VNWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3275 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG074600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103284 | 0.0 | AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982339.1 | 0.0 | homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A3L6TJE3 | 0.0 | A0A3L6TJE3_PANMI; Homeobox-leucine zipper protein HOX32 | ||||
STRING | Pavir.Ib04083.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG074600.1.p |
Publications ? help Back to Top | |||
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