PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG069000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 347aa    MW: 36702.2 Da    PI: 9.8609
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG069000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.91.1e-30165221158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR+RgsgGrF
  Pavir.9KG069000.2.p 165 DAPIYVNPKQYEGILRRRRARAKAERENRL-AKGRKPYLHESRHLHAMRRARGSGGRF 221
                          68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-33163224IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.302164224IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.3E-28167221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-22167189IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-22198221IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MMSFKGHEGL GQVAAGSQAS HVAAGAPLPW WAGPQLIYGE PAPLSPEETR RDGHFQVVPG  60
AQGGTPDPAP PAATKRGNPE VLKFSVFQGN LESGGKGDKN PEHSTTIALQ SPFPEYNGRF  120
EIGLGQSMVP SNYSCDDQCY GVLTTYGMRS MSGGRMLLPL NAPADAPIYV NPKQYEGILR  180
RRRARAKAER ENRLAKGRKP YLHESRHLHA MRRARGSGGR FVNTKKEGGA SANGASKTVS  240
AAPAARLATS PSTEPRRVPG LGKGSDGSNP RCQSRSSVSS LSGSEVSSIY DDHASRHQYG  300
GMEPHLRAPS FFTPLPAIMD GDHGGAAAIP SFKWAASDGC CELLKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A6e-17165223261HAPB protein
4g92_A6e-17165223261HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.63040.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG069000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796559.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_025796560.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_025796561.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A3L6TJ990.0A0A3L6TJ99_PANMI; Nuclear transcription factor Y subunit A-10-like
STRINGPavir.Ib04124.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.36e-23nuclear factor Y, subunit A10