PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG060600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 480aa    MW: 52396.6 Da    PI: 6.0466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG060600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.3e-07236257223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C++Cgk F+r  nL+ H+r H
  Pavir.9KG060600.1.p 236 FCSICGKGFKRDANLRMHMRGH 257
                          6*******************98 PP
2zf-C2H2110.0013354368620
                          TTEEESSHHHHHHHH CS
              zf-C2H2   6 CgksFsrksnLkrHi 20 
                          Cg+sFsrk+ L  H 
  Pavir.9KG060600.1.p 354 CGTSFSRKDKLFAHV 368
                          **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-5233260No hitNo description
PROSITE profilePS5015712.092235262IPR007087Zinc finger, C2H2
SMARTSM003550.0023235257IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-6236286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
SMARTSM0035590284317IPR015880Zinc finger, C2H2-like
SMARTSM0035537322344IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNRSQNHIHD QSAANFCHQF GSDNPFLGMG IQQPFAPFTS PFGASSSTNI PHMDWNPATM  60
LDNLTFIEEK IRQVKDVIQT MVDNGSQLPC CPGDLAQQQQ VVNADLTCLI VQLISTAGSL  120
LPSLKNSSFL SHPPAGQTGI VNHVGSSSSF IPNVTTISEE NEEMCSPEDY EELFKGFTDG  180
AMEGDIEIDN VLVGEQDAKD GDEGGDAGMD GESLPPGSYE LLQLERDEIL APHTHFCSIC  240
GKGFKRDANL RMHMRGHGDE YKSPAALAKP PRDASAEHEV VKRYSCPFVG CKRNKLHKNF  300
QPLKTILCVK NHYKRNHCEK SYTCSRCHTK KFSVMADLKT HEKHCGRDKW LCSCGTSFSR  360
KDKLFAHVAL FQGHTPALPA EETKTFSDQI GDLGSHQEPA KLPSSTGSSF MWGTSSGSDS  420
VLDIKGFDGC SDDFLSTANF GSFNFSFGLA DGFTGEPSGG SFPMMPSEHF QNAQKKGKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.2510.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG060600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809367.10.0LOW QUALITY PROTEIN: zinc finger protein STAR3-like
SwissprotQ943I61e-143STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2T7E5L80.0A0A2T7E5L8_9POAL; Uncharacterized protein
STRINGPavir.J02020.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-132C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]