PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG058500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 749aa MW: 80910 Da PI: 7.3149 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.3 | 1.7e-14 | 457 | 495 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++C+CkkskClk+YC Cfaa+++Cs C+C++C N+++ Pavir.9KG058500.1.p 457 CRRCSCKKSKCLKLYCACFAAKVYCSGLCSCQGCLNNHT 495 789*********************************987 PP | |||||||
2 | TCR | 49.7 | 7.2e-16 | 541 | 580 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+ClkkYCeCf++g+ Cs +C+C +CkN+ Pavir.9KG058500.1.p 541 RHKRGCNCRKSSCLKKYCECFQSGVGCSVNCRCASCKNSF 580 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.0E-12 | 455 | 496 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.417 | 456 | 581 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.2E-10 | 458 | 493 | IPR005172 | CRC domain |
SMART | SM01114 | 1.0E-14 | 541 | 582 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-11 | 543 | 579 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MDPPESPPAP AGRPPAPSAA VSLYEDSPVF DFINSLSPIA TPKPLGSAQN VQLFKSSDLL 60 PDSSIFTSPQ VNPQKEYKPR TRDGYVQLSE GLSPSCQRNR IGISSRIELS GPPTIASENC 120 SPSEYATILP SKWPRPIPLG SEILRDAKRQ DTDGKADHNP DMGQVKLSST CYDHNGLDQL 180 DSSSSGRNVQ ENELTKQYND DLAACTSNLL ISRSGTGDDV MSKSDLSLEA QQLTWKLRSD 240 VIFSKSLMPM AQGKLEDSRR ELFDGSTGCY IQSVGAAEGV ATNHDPQMLP GVIQSQLDSN 300 EYFFDTFKVP SDGMALSEHQ CSGMHRRSLF NEKVRTSDLS GQSGSNLHHI NICGDNYLKP 360 SRSPVYALPG IGLHLNAVVS NASNTMPFTS SLPLPPEHNS PTTIVSCSET GLCSSEVNTL 420 IHDDQSSQKT MPSADKSCQE SYKKKRPKLQ NGDGGSCRRC SCKKSKCLKL YCACFAAKVY 480 CSGLCSCQGC LNNHTHEETV SCIRKRTESR NPLAFAPTVT HACDSGSDFG DDSNNTPASA 540 RHKRGCNCRK SSCLKKYCEC FQSGVGCSVN CRCASCKNSF GKRNGVLLLA IEEMEKGAKA 600 KGTCSKEEKL AFDKQDVVSQ SSDLPSTDDL FATPSLEPCR SSILLPSTCS EPPVPTAGCS 660 SQLHNSQSPM KADVLLSPIE TCAMEPILVD GSSNIQEMSS SYTTRVKVVS PNKKRVSPLQ 720 TGTGLSPIGR SGRKLFSEVH PFLPFPHW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-12 | 460 | 578 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-12 | 460 | 578 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG058500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797027.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A2T7C3E1 | 0.0 | A0A2T7C3E1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J39238.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14774 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-54 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG058500.1.p |