PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG058100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 515aa MW: 53269.8 Da PI: 6.4353 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.7 | 7.7e-17 | 319 | 365 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Pavir.9KG058100.1.p 319 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 365 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.85E-21 | 313 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.457 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.73E-17 | 318 | 369 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.3E-21 | 319 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-14 | 319 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-18 | 321 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MNQFVPDWNS MGDTSRPLGD DDDLIELLWC NGHVVMQSQN NRKLPPPRPE KPAGAAAPAP 60 APAAQDDEAG LWFPFALADS LDKDIFSEFF CEAPAPAAAP VPATPGVEDG KPCRDVPVED 120 DDRRGGACAA SGAPSDLMPP PKSAPVSGSR QQTMSLADGG DNASDLSDLV RAGSAGKVAA 180 EAGASSMLSA IGSSICGSNQ VLVQRAACRA SGAACGGGGG GCSGSALPSA MGSANANASG 240 RGNEATVASS SGRSNYCFGT TTTTTEPTSN SNWSSKRKRL DTEDSESPSE DAESESAAML 300 VRKPPQKLRA ARRSRAAEVH NLSERRRRDR INEKMRALQE LIPHCNKTDK ASMLDEAIEY 360 LKSLQLQVQM MWMGSGIAAP PAMFPGVHQY LPRMGVGMGA AAMPSMPRMP FLPPQPVVPN 420 APVHNPVPLS PAAYRGHMPA VGITEPYAHY LGVNHLQPTP SQHFAQGAVG YYPLGAKAAA 480 VQQSPALHHV PGGGGAAAVP GVLPPESAPS RGPG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 323 | 328 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.41998 | 1e-163 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG058100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956645 | 0.0 | EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794697.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1 | ||||
TrEMBL | A0A2T7C3N4 | 0.0 | A0A2T7C3N4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04022.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3107 | 36 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-34 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG058100.1.p |