PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG057800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 33583.2 Da PI: 7.103 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.1 | 4.3e-15 | 121 | 167 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq Pavir.9KG057800.3.p 121 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 167 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.082 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-17 | 121 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-18 | 121 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-12 | 121 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.49E-15 | 122 | 171 | No hit | No description |
SMART | SM00353 | 5.5E-16 | 123 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEDTSLFIKC ATNALQHEQP AGLAAGDLLD FSEATFPSLQ ALREASHAAE MVRELITGVH 60 APNISWSSGG GGGGAASWTF GATTFAHPGS NGLRGLPDLG HGAPPTRRAG VGSMSASYAQ 120 DHIIAERKRR EKINQRFIEL STVIPGLKKM DKATILSDAT RYVKELQEKL KDVEAGASSG 180 RSIETRLVLV KRPCLHAEAA AAGDDGSQRS ASPGTPPAAT KELPEIEVRF SEKNVMVRVH 240 CEKSKGVAVK VLAEIEGLQL TVVHANVMLF SACTLIIAIT AKEGFSATKE EIVHRLDSAL 300 LNLQHSRICN STEET* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 130 | ERKRRE |
2 | 126 | 131 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.19868 | 2e-51 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG057800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796507.1 | 0.0 | transcription factor bHLH25-like | ||||
Refseq | XP_025796508.1 | 0.0 | transcription factor bHLH25-like | ||||
TrEMBL | A0A2T8I1A9 | 0.0 | A0A2T8I1A9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04190.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG057800.3.p |