PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG057800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 318aa    MW: 33811.4 Da    PI: 6.9073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG057800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.4e-15121167455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Pavir.9KG057800.2.p 121 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 167
                          699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.082117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-17121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-18121175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-12121167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-15122171No hitNo description
SMARTSM003535.5E-16123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEDTSLFIKC ATNALQHEQP AGLAAGDLLD FSEATFPSLQ ALREASHAAE MVRELITGVH  60
APNISWSSGG GGGGAASWTF GATTFAHPGS NGLRGLPDLG HGAPPTRRAG VGSMSASYAQ  120
DHIIAERKRR EKINQRFIEL STVIPGLKKM DKATILSDAT RYVKELQEKL KDVEAGASSG  180
RSIETRLVLV KRPCLHAEAA AAGDDGSQRS ASPGTPPAAT KELPEIEVRF SEKNVMVRVH  240
CEKSKGVAVK VLAEIEGLQL TVVHANVMLF SACTLIIAIT AKVEEGFSAT KEEIVHRLDS  300
ALLNLQHSRI CNSTEET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130ERKRRE
2126131RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.198682e-51stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG057800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796507.10.0transcription factor bHLH25-like
RefseqXP_025796508.10.0transcription factor bHLH25-like
TrEMBLA0A2T8I1A90.0A0A2T8I1A9_9POAL; Uncharacterized protein
STRINGPavir.Ib04190.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-46bHLH family protein