PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG057700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 363aa    MW: 38512.1 Da    PI: 5.283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG057700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.4e-15163209455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Pavir.9KG057700.2.p 163 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATKYVKELQ 209
                          699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.05159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-17163218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12163209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-15164213No hitNo description
SMARTSM003533.3E-16165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.795279355IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEEDSSLFMQ WAMDTLRHAA ISSNDGSEAT TFPSLQALRE ASHAAEMVQE LISAAPASSW  60
SSGDTTDGDP PGAAMDHDAW PPTPNSARRA TTPTRSSSGT NNLPVSWNFG AASALPGSDG  120
VLAAEAAPTH RLPDIVSWSS PPTRRAAGAK GAGSMSTTPY AQDHIIAERK RREKINQRFI  180
ELSTVIPGLK KMDKATILSD ATKYVKELQE KLRDLEAGGS NGRSIVETVV LVKRPCRHDA  240
AAKPEEDGSP LSASSAAPAA AARKQLPEIE ARFSDKSVMV RIDCEDGKGV AVKVLAELEE  300
LPLRITHANV MPFPAGTLII TITAKVEEGF TLNAEDIVGR LNSALLHQHN SSCNSTDEET  360
GN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERKRRE
2168173RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG057700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795850.10.0transcription factor NAI1-like isoform X2
TrEMBLA0A2S3IJF20.0A0A2S3IJF2_9POAL; Uncharacterized protein
TrEMBLA0A2S3IJF50.0A0A2S3IJF5_9POAL; Uncharacterized protein
STRINGPavir.Ib04096.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-43bHLH family protein