PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG057600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 379aa MW: 39080.5 Da PI: 6.4232 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.3 | 7.6e-15 | 189 | 236 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+++Lq Pavir.9KG057600.2.p 189 QDHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVRELQ 236 5699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.056 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-12 | 190 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.94E-17 | 190 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-18 | 190 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.21E-15 | 191 | 240 | No hit | No description |
SMART | SM00353 | 1.5E-15 | 192 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEDSTQFMQW ALSTLQHEQP PPGTPAPAAV AYDDGCDDTV SSIPVLRYSA SVESMVPGEP 60 PAREGLRASN SWSSVDTDSG SGGGSGGGAS ATAWSPPQHA AMCAATAPGS CSSGTNQQPM 120 SWDFNSASAQ LIIEAQPNSA AAALQAESGA GGGGGVAVPQ LTQHGRRSPP TRRASAKISA 180 SSSSAPYSQD HIIAERKRRE KINQRFIELS TVIPGLKKMD KATILSDATR YVRELQEKLR 240 ALQKDGGGGG GGRGMESAVL GSKKARIAAP DDDEDGGAHP NAAGGPAATR NNALPEIEVR 300 ISEGNAVMVT IHCRDAKGVV VRSLAEVEGL HLSITHTNVV QFSAAVLIIN IMAKVEQGFN 360 STADDIVGRL NAALACHK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 199 | ERKRRE |
2 | 195 | 200 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.19868 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG057600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107190 | 6e-54 | AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence. | |||
GenBank | HQ858862 | 6e-54 | HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792499.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A2S3IJE8 | 0.0 | A0A2S3IJE8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04188.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG057600.2.p |