PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG057600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 380aa    MW: 39450.8 Da    PI: 6.3495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG057600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.7e-15189236355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+++Lq
  Pavir.9KG057600.1.p 189 QDHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVRELQ 236
                          5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.056186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17190244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-12190236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-18190244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-15191240No hitNo description
SMARTSM003531.5E-15192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEDSTQFMQW ALSTLQHEQP PPGTPAPAAV AYDDGCDDTV SSIPVLRYSA SVESMVPGEP  60
PAREGLRASN SWSSVDTDSG SGGGSGGGAS ATAWSPPQHA AMCAATAPGS CSSGTNQQPM  120
SWDFNSASAQ LIIEAQPNSA AAALQAESGA GGGGGVAVPQ LTQHGRRSPP TRRASAKISA  180
SSSSAPYSQD HIIAERKRRE KINQRFIELS TVIPGLKKMD KATILSDATR YVRELQEKLR  240
ALQKDGGGGG GGRGMESAVL GSKKARIAAP DDDEDGGAHP NAAGGPAATR NNALPEIEVR  300
ISEGNAVMVT IHCRDAKGVV VRSLAEVEGL HLSITHTNVV QFSAAVLIIN IMAKVSFNQS  360
VYESNQPSVH DPITWIHTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199ERKRRE
2195200RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.198680.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG057600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071906e-54AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588626e-54HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792499.11e-178transcription factor bHLH18-like
TrEMBLA0A2S3IJE81e-177A0A2S3IJE8_9POAL; Uncharacterized protein
STRINGPavir.Ib04188.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-30bHLH family protein