PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG049900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 359aa    MW: 38734.6 Da    PI: 7.8151
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG049900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.72e-082933252254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          ++yp+  e+ +LA ++gL+ rq++ WF N R +
  Pavir.9KG049900.2.p 293 HPYPDDGEKLRLAVSTGLSRRQISCWFINARVR 325
                          89*****************************88 PP
2BELL53.27.6e-181542151071
                 BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                          akLl ll e++ r ++y  +l  v++sFe + g g+a  Ytsl  +a++rhF +L+ ai  +
  Pavir.9KG049900.2.p 154 AKLLGLLSELESRQERYFGELGRVAASFEPALGDGAASAYTSLMAQAMARHFGNLRRAILRR 215
                          8**********************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-1087214IPR006563POX domain
PfamPF075263.9E-2392212IPR006563POX domain
Gene3DG3DSA:1.10.10.608.2E-24268341IPR009057Homeodomain-like
SMARTSM003898.2E-7269333IPR001356Homeobox domain
SuperFamilySSF466892.61E-16275337IPR009057Homeodomain-like
CDDcd000862.17E-9280330No hitNo description
PfamPF059208.1E-16286325IPR008422Homeobox KN domain
PROSITE profilePS5007111.143288329IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVMAKQHGKG SPKRAPNEPA PRRGAVAGRP SPPAPFRLEQ CCRCDDHRRK EDDGSSSNGA  60
GPLLLTLGPL GPATDDCRCS CVIAPAPATM SVLRGSRYLR PAQELLGEVV RMADLAAGAG  120
DEEAAADKQE RLDAGGHHRA ARRAAMNDGD GIQAKLLGLL SELESRQERY FGELGRVAAS  180
FEPALGDGAA SAYTSLMAQA MARHFGNLRR AILRRLRLHA AAAAKRSLRA GEEGEQGGGD  240
DEEEVTEEMV DRVARRTKLA AAARAEQAWR PIRGLPEGSV AVLRAWLFDH FLHPYPDDGE  300
KLRLAVSTGL SRRQISCWFI NARVRLWKPM IEEMYKDEFS EGSAVSRDDD TSGASSSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.247846e-76callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG049900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792968.11e-160BEL1-like homeodomain protein 11
TrEMBLA0A3L6TG691e-162A0A3L6TG69_PANMI; BEL1-like homeodomain protein 11
STRINGPavir.Ib04220.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.12e-35BEL1-like homeodomain 11