PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG048100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 311aa    MW: 33202.8 Da    PI: 4.4077
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG048100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.38e-17217253135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Pavir.9KG048100.1.p 217 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 253
                          **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.3E-776111IPR010399Tify domain
PROSITE profilePS5132014.0676111IPR010399Tify domain
PfamPF062003.6E-1179110IPR010399Tify domain
PROSITE profilePS5101713.404145187IPR010402CCT domain
PfamPF062036.6E-15145185IPR010402CCT domain
SMARTSM004018.0E-11211264IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-11215266No hitNo description
CDDcd002022.54E-15216262No hitNo description
Gene3DG3DSA:3.30.50.107.0E-14216255IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-14217253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPDADVDVEM RAAGAATATA AAASTAPSDD DGDDGTGEDE EDGEDVDDED EDEDEEERTA  60
PAPVEEPPAP APVSAFPGNP NQLTLLFQGE IYVFESVTPD KVQDVLLLLG RGELPPDYAG  120
KVVPSQNENK GYDDILRRTD IPAKRVASLL RFREKRKERN FDKKIRYAVR KEVALRMQRR  180
KGQFAGRASL EGESPALVCD PGSQSSGLDF VSRESKCQNC GTSEKMTPAM RRGPAGPRTL  240
CNACGLMWAN KGTLRSCPKA KVESHVVAIE QAGNDNKVLV PPKNDNTSVS ASNGEVTIAA  300
EAGALKGDSI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.273120.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG048100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649660.0EU964966.1 Zea mays clone 282829 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793442.11e-155GATA transcription factor 18-like isoform X1
SwissprotQ10F251e-128GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A3L6TRR51e-156A0A3L6TRR5_PANMI; Uncharacterized protein
STRINGPavir.Ib04266.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-64ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]