PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG045000.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 1295aa    MW: 142117 Da    PI: 4.0866
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG045000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.4e-10847869527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +Crf++ +G C+yG++C+F+H++
  Pavir.9KG045000.3.p 847 NCRFYMSSGSCSYGSSCHFNHPQ 869
                          7********************97 PP
2zf-CCCH30.18e-10872895427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          + C +++r+GtCkyG +C+F+H++
  Pavir.9KG045000.3.p 872 RKCTYYMRNGTCKYGKKCCFNHPE 895
                          57********************96 PP
3zf-CCCH22.81.6e-079991024227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                            +++C+f +r+G Ck+ ++C++ H++
  Pavir.9KG045000.3.p  999 ERPECPFLQRFGNCKFASTCQYYHPQ 1024
                           689*********************97 PP
4zf-CCCH38.51.9e-1210711096227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                           + ++C+f+++tG Ck+G+ CkF+H++
  Pavir.9KG045000.3.p 1071 GKPECPFYMKTGSCKFGADCKFHHPK 1096
                           789*********************96 PP
5zf-CCCH21.44.4e-0711631189127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                           ++++ Cr+++++G Ck+ + C F+H++
  Pavir.9KG045000.3.p 1163 PGQPDCRYYMQFGKCKFQSACIFNHPK 1189
                           5789*********************96 PP
6zf-CCCH35.32e-1111991222427
                           ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                           ++C+f+++tGtC++G+ C F+H++
  Pavir.9KG045000.3.p 1199 AECPFYMKTGTCQFGSACEFSHPK 1222
                           68********************96 PP
7zf-CCCH23.78.3e-0812621287126
                           --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                           +++++C+++++ G+Ck+  +CkF+H+
  Pavir.9KG045000.3.p 1262 PGEPECSHYMKHGYCKFQKSCKFHHP 1287
                           5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0012842869IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.934842867IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5846870IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8847869IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5848869IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892868896IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025871895IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7872895IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5872896IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4874895IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2359971025IPR000571Zinc finger, CCCH-type
SMARTSM003560.19981024IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-610691096IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.2310691097IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-1010711096IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-510741097IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-510751096IPR000571Zinc finger, CCCH-type
SMARTSM003560.004211621189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.18311621190IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-411641189IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-611951222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.51111951223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-511971224IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-911991222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-412011222IPR000571Zinc finger, CCCH-type
SMARTSM003560.003712611288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3112611289IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-512631287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1295 aa     Download sequence    Send to blast
MIQDQEEVVE QEVPPEDCAA VVQDQSNSTS VEQCASDETR AVKYDDDVEV NEQVTDQEGA  60
VSILDAAEDG GAVGLQEEDV VVAEQGEDVI SVQDHLEVVE QCTGYRLRTT TGDNAGQDQN  120
LLEQEEATEY YTALGAVEHC TNDGSKVVKD VDIVEEVERV VEQEGPLGIL GAAKDVGVLD  180
VAKDGAPVES QEENVVVKEQ NEDVIFVQDQ HKVVEQCTGD LLITATCDNA AQDQDVVEQE  240
GATEYYTAVE AVEQCTIHGS KAVKDGNVVE EKENAVGQEV AVGVLDAAKN CSTVESQAKE  300
DVVVAEQSEY IISVQNEHKV VEQCTGDQLK ATADDNATQY QGVLEQEGAT ECYTALEAAE  360
ECANDETRAV NDGNVVEEKE RLVKQEGDVS VLNAAEDDVI VEPQEGVVAV EQCESDISVQ  420
EQHKVVERLT SGLLRTTMDG SGAEGQEVVE QEGSVVVRDA TTYEIAVEDR EKEVKQSACD  480
ESRATNDENV AEASKKMVDQ EDVIDKHGVI TDVSGVELLE ENSLVVVEQG GEDIPLPDEG  540
NVVEQYTSDQ LRATMDDNAA ENQEIAEQEG AIVERVVTTD GISVEEQEKE VEQSAVAEST  600
ASKDEDGVED NEGVVVAEQD GVEISVGDVG NVVEQCISDQ LRATMEDNAV KCQEVVEQEG  660
AIFERVATGG GTTVEDQEKE VEQSAGNELR VTKDENTVED AIGKQGATKD GSGVESQEED  720
VVLGEQGGDD ISIRDEGNVV EQCTSDLQRT TTDDNAAEDP EMVEQGGVVS ILGAAKVDIA  780
VESREDIVVA EQVEDGVSVQ DQYKVVEQCT SDQLRTSTDH FAAEDHEAGR ENIGLSTRSP  840
QRPGKLNCRF YMSSGSCSYG SSCHFNHPQG ARKCTYYMRN GTCKYGKKCC FNHPEQVLDV  900
QLHMPTGWDD TNLQSSPHSK KSAEYTTIND ISSGSEILPP NILRMLLPPQ NEPPCTEEKE  960
MKVQKDPDWP SASDDSDGCC SADSSDGPLC KQEHMDYPER PECPFLQRFG NCKFASTCQY  1020
YHPQDKFPSK YQPKDKFPSR YHPKDNFQSR YRSKRDPPLA EELKAYPDRP GKPECPFYMK  1080
TGSCKFGADC KFHHPKDLTP SMQWPGSPKS LVAANEHHPA ARIPSIQAPA SPEGSVAANE  1140
HHQAARIALQ DHMYQQQKCP ERPGQPDCRY YMQFGKCKFQ SACIFNHPKD RLSSGWHPAE  1200
CPFYMKTGTC QFGSACEFSH PKDQSSSTGE AIGDDTDYEH DFITKSENVL QQQEKTIYPE  1260
RPGEPECSHY MKHGYCKFQK SCKFHHPTYR LSRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79730.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG045000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793429.10.0uncharacterized protein LOC112874363 isoform X1
TrEMBLA0A2S3IJ820.0A0A2S3IJ82_9POAL; Uncharacterized protein
STRINGPavir.Ib04286.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.26e-37zinc finger nuclease 3