PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG045000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 1302aa    MW: 143051 Da    PI: 4.0811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG045000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-10847869527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +Crf++ +G C+yG++C+F+H++
  Pavir.9KG045000.2.p 847 NCRFYMSSGSCSYGSSCHFNHPQ 869
                          7********************97 PP
2zf-CCCH22.81.6e-0710061031227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                            +++C+f +r+G Ck+ ++C++ H++
  Pavir.9KG045000.2.p 1006 ERPECPFLQRFGNCKFASTCQYYHPQ 1031
                           689*********************97 PP
3zf-CCCH38.51.9e-1210781103227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                           + ++C+f+++tG Ck+G+ CkF+H++
  Pavir.9KG045000.2.p 1078 GKPECPFYMKTGSCKFGADCKFHHPK 1103
                           789*********************96 PP
4zf-CCCH21.44.4e-0711701196127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                           ++++ Cr+++++G Ck+ + C F+H++
  Pavir.9KG045000.2.p 1170 PGQPDCRYYMQFGKCKFQSACIFNHPK 1196
                           5789*********************96 PP
5zf-CCCH35.32e-1112061229427
                           ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                           ++C+f+++tGtC++G+ C F+H++
  Pavir.9KG045000.2.p 1206 AECPFYMKTGTCQFGSACEFSHPK 1229
                           68********************96 PP
6zf-CCCH23.78.3e-0812691294126
                           --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                           +++++C+++++ G+Ck+  +CkF+H+
  Pavir.9KG045000.2.p 1269 PGEPECSHYMKHGYCKFQKSCKFHHP 1294
                           5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0012842869IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713842870IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5846869IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8847869IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5848868IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.23510041032IPR000571Zinc finger, CCCH-type
SMARTSM003560.110051031IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-610761103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.2310761104IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-1010781103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-510811104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-510821103IPR000571Zinc finger, CCCH-type
SMARTSM003560.004211691196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.18311691197IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-411711196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.51112021230IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-612021229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-512041231IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-912061229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-412081229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3112681296IPR000571Zinc finger, CCCH-type
SMARTSM003560.003712681295IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-512701294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1302 aa     Download sequence    Send to blast
MIQDQEEVVE QEVPPEDCAA VVQDQSNSTS VEQCASDETR AVKYDDDVEV NEQVTDQEGA  60
VSILDAAEDG GAVGLQEEDV VVAEQGEDVI SVQDHLEVVE QCTGYRLRTT TGDNAGQDQN  120
LLEQEEATEY YTALGAVEHC TNDGSKVVKD VDIVEEVERV VEQEGPLGIL GAAKDVGVLD  180
VAKDGAPVES QEENVVVKEQ NEDVIFVQDQ HKVVEQCTGD LLITATCDNA AQDQDVVEQE  240
GATEYYTAVE AVEQCTIHGS KAVKDGNVVE EKENAVGQEV AVGVLDAAKN CSTVESQAKE  300
DVVVAEQSEY IISVQNEHKV VEQCTGDQLK ATADDNATQY QGVLEQEGAT ECYTALEAAE  360
ECANDETRAV NDGNVVEEKE RLVKQEGDVS VLNAAEDDVI VEPQEGVVAV EQCESDISVQ  420
EQHKVVERLT SGLLRTTMDG SGAEGQEVVE QEGSVVVRDA TTYEIAVEDR EKEVKQSACD  480
ESRATNDENV AEASKKMVDQ EDVIDKHGVI TDVSGVELLE ENSLVVVEQG GEDIPLPDEG  540
NVVEQYTSDQ LRATMDDNAA ENQEIAEQEG AIVERVVTTD GISVEEQEKE VEQSAVAEST  600
ASKDEDGVED NEGVVVAEQD GVEISVGDVG NVVEQCISDQ LRATMEDNAV KCQEVVEQEG  660
AIFERVATGG GTTVEDQEKE VEQSAGNELR VTKDENTVED AIGKQGATKD GSGVESQEED  720
VVLGEQGGDD ISIRDEGNVV EQCTSDLQRT TTDDNAAEDP EMVEQGGVVS ILGAAKVDIA  780
VESREDIVVA EQVEDGVSVQ DQYKVVEQCT SDQLRTSTDH FAAEDHEAGR ENIGLSTRSP  840
QRPGKLNCRF YMSSGSCSYG SSCHFNHPQL KAKLEVSNFP SEQRNREVEF LELNRVGLPI  900
REGARKCTYY MRNGWDDTNL QSSPHSKKSA EYTTINDISS GSEILPPNIL RMLLPPQNEP  960
PCTEEKEMKV QKDPDWPSAS DDSDGCCSAD SSDGPLCKQE HMDYPERPEC PFLQRFGNCK  1020
FASTCQYYHP QDKFPSKYQP KDKFPSRYHP KDNFQSRYRS KRDPPLAEEL KAYPDRPGKP  1080
ECPFYMKTGS CKFGADCKFH HPKDLTPSMQ WPGSPKSLVA ANEHHPAARI PSIQAPASPE  1140
GSVAANEHHQ AARIALQDHM YQQQKCPERP GQPDCRYYMQ FGKCKFQSAC IFNHPKDRLS  1200
SGWHPAECPF YMKTGTCQFG SACEFSHPKD QSSSTGEAIG DDTDYEHDFI TKSENVLQQQ  1260
EKTIYPERPG EPECSHYMKH GYCKFQKSCK FHHPTYRLSR T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79730.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG045000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793430.10.0uncharacterized protein LOC112874363 isoform X2
TrEMBLA0A2S3IJR70.0A0A2S3IJR7_9POAL; Uncharacterized protein
STRINGPavir.Ib04286.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.24e-37zinc finger nuclease 3