PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG045000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 1328aa    MW: 146011 Da    PI: 4.1065
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG045000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-10847869527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +Crf++ +G C+yG++C+F+H++
  Pavir.9KG045000.1.p 847 NCRFYMSSGSCSYGSSCHFNHPQ 869
                          7********************97 PP
2zf-CCCH30.94.8e-10905928427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          + C +++r+GtCkyG +C+F+H++
  Pavir.9KG045000.1.p 905 RKCTYYMRNGTCKYGKKCCFNHPE 928
                          67********************96 PP
3zf-CCCH22.81.6e-0710321057227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                            +++C+f +r+G Ck+ ++C++ H++
  Pavir.9KG045000.1.p 1032 ERPECPFLQRFGNCKFASTCQYYHPQ 1057
                           689*********************97 PP
4zf-CCCH38.51.9e-1211041129227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                           + ++C+f+++tG Ck+G+ CkF+H++
  Pavir.9KG045000.1.p 1104 GKPECPFYMKTGSCKFGADCKFHHPK 1129
                           789*********************96 PP
5zf-CCCH21.44.5e-0711961222127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                           ++++ Cr+++++G Ck+ + C F+H++
  Pavir.9KG045000.1.p 1196 PGQPDCRYYMQFGKCKFQSACIFNHPK 1222
                           5789*********************96 PP
6zf-CCCH35.22e-1112321255427
                           ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                           ++C+f+++tGtC++G+ C F+H++
  Pavir.9KG045000.1.p 1232 AECPFYMKTGTCQFGSACEFSHPK 1255
                           68********************96 PP
7zf-CCCH23.78.5e-0812951320126
                           --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                           +++++C+++++ G+Ck+  +CkF+H+
  Pavir.9KG045000.1.p 1295 PGEPECSHYMKHGYCKFQKSCKFHHP 1320
                           5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.713842870IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012842869IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5846869IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8847869IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5848868IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695901929IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-5901928IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6904929IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7905928IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5907928IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.23510301058IPR000571Zinc finger, CCCH-type
SMARTSM003560.110311057IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-611021129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.2311021130IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-1011041129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-511071130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-511081129IPR000571Zinc finger, CCCH-type
SMARTSM003560.004211951222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.18311951223IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-411971222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.51112281256IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-612281255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-512301257IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-912321255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-412341255IPR000571Zinc finger, CCCH-type
SMARTSM003560.003712941321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3112941322IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-512961320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1328 aa     Download sequence    Send to blast
MIQDQEEVVE QEVPPEDCAA VVQDQSNSTS VEQCASDETR AVKYDDDVEV NEQVTDQEGA  60
VSILDAAEDG GAVGLQEEDV VVAEQGEDVI SVQDHLEVVE QCTGYRLRTT TGDNAGQDQN  120
LLEQEEATEY YTALGAVEHC TNDGSKVVKD VDIVEEVERV VEQEGPLGIL GAAKDVGVLD  180
VAKDGAPVES QEENVVVKEQ NEDVIFVQDQ HKVVEQCTGD LLITATCDNA AQDQDVVEQE  240
GATEYYTAVE AVEQCTIHGS KAVKDGNVVE EKENAVGQEV AVGVLDAAKN CSTVESQAKE  300
DVVVAEQSEY IISVQNEHKV VEQCTGDQLK ATADDNATQY QGVLEQEGAT ECYTALEAAE  360
ECANDETRAV NDGNVVEEKE RLVKQEGDVS VLNAAEDDVI VEPQEGVVAV EQCESDISVQ  420
EQHKVVERLT SGLLRTTMDG SGAEGQEVVE QEGSVVVRDA TTYEIAVEDR EKEVKQSACD  480
ESRATNDENV AEASKKMVDQ EDVIDKHGVI TDVSGVELLE ENSLVVVEQG GEDIPLPDEG  540
NVVEQYTSDQ LRATMDDNAA ENQEIAEQEG AIVERVVTTD GISVEEQEKE VEQSAVAEST  600
ASKDEDGVED NEGVVVAEQD GVEISVGDVG NVVEQCISDQ LRATMEDNAV KCQEVVEQEG  660
AIFERVATGG GTTVEDQEKE VEQSAGNELR VTKDENTVED AIGKQGATKD GSGVESQEED  720
VVLGEQGGDD ISIRDEGNVV EQCTSDLQRT TTDDNAAEDP EMVEQGGVVS ILGAAKVDIA  780
VESREDIVVA EQVEDGVSVQ DQYKVVEQCT SDQLRTSTDH FAAEDHEAGR ENIGLSTRSP  840
QRPGKLNCRF YMSSGSCSYG SSCHFNHPQL KAKLEVSNFP SEQRNREVEF LELNRVGLPI  900
REGARKCTYY MRNGTCKYGK KCCFNHPEQV LDVQLHMPTG WDDTNLQSSP HSKKSAEYTT  960
INDISSGSEI LPPNILRMLL PPQNEPPCTE EKEMKVQKDP DWPSASDDSD GCCSADSSDG  1020
PLCKQEHMDY PERPECPFLQ RFGNCKFAST CQYYHPQDKF PSKYQPKDKF PSRYHPKDNF  1080
QSRYRSKRDP PLAEELKAYP DRPGKPECPF YMKTGSCKFG ADCKFHHPKD LTPSMQWPGS  1140
PKSLVAANEH HPAARIPSIQ APASPEGSVA ANEHHQAARI ALQDHMYQQQ KCPERPGQPD  1200
CRYYMQFGKC KFQSACIFNH PKDRLSSGWH PAECPFYMKT GTCQFGSACE FSHPKDQSSS  1260
TGEAIGDDTD YEHDFITKSE NVLQQQEKTI YPERPGEPEC SHYMKHGYCK FQKSCKFHHP  1320
TYRLSRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79730.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG045000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793429.10.0uncharacterized protein LOC112874363 isoform X1
TrEMBLA0A2S3IJ820.0A0A2S3IJ82_9POAL; Uncharacterized protein
STRINGPavir.Ib04286.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.26e-37zinc finger nuclease 3