PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG031700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 370aa MW: 39146.9 Da PI: 8.3844 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 165.3 | 2.9e-51 | 111 | 267 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k+ai+e++ + +++sec e++sss s++ + ++ Pavir.9KG031700.1.p 111 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKAAIQEIMTD--DASSECvEDGSSSLSVDGKPNQa 198 589**************************************************************..66667999999999998555556 PP TCP 89 .....................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 k +k+a+ +k+++ks +++ ++ke+rakar+rarert+ek+r+++++ Pavir.9KG031700.1.p 199 elgllgggdqqpkgnggkkpaKPRKAATAPKPPRKSGNAHPVPDKETRAKARERARERTKEKHRMRWVK 267 7888888888889999999966666666999999****9***************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.2E-45 | 113 | 263 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.255 | 114 | 172 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.593 | 243 | 260 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MFPFCDSSSP MDLPLYQQLQ LSPPSPKPGQ SSTSSFFYYP CSPPFAAADA SFHLSYLLGS 60 AAAAGATPVI DSPSPELPLM EQAPAPATEL DASACANAQG AGVSLDRASA AAARKDRHSK 120 ICTAGGMRDR RMRLSLDVAR KFFALQDMLG FDKASKTVQW LLNTSKAAIQ EIMTDDASSE 180 CVEDGSSSLS VDGKPNQAEL GLLGGGDQQP KGNGGKKPAK PRKAATAPKP PRKSGNAHPV 240 PDKETRAKAR ERARERTKEK HRMRWVKLAS AIDVEAAAAS VARDSRPSSM PNNLNHHSSS 300 NMAACAAAEL EERCSSTLNN GGRMQEITGA SDVIIAFGGN GGYGGAGNYY CQEQWDLGGV 360 VFQQNSRFY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in axillary inflorescence primordia, immature internodes below these primordia, and immature husk surrounding these primordia. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:9087405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG031700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243260 | 0.0 | AC243260.1 Panicum virgatum clone PV_ABa103-K10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796975.1 | 0.0 | transcription factor TEOSINTE BRANCHED 1-like | ||||
Swissprot | Q93WI2 | 1e-164 | TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1 | ||||
TrEMBL | A0A3L6TGV0 | 0.0 | A0A3L6TGV0_PANMI; Transcription factor TEOSINTE BRANCHED 1-like | ||||
STRING | Pavir.Ib04362.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-20 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG031700.1.p |
Publications ? help Back to Top | |||
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