PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG018900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 377aa MW: 40334.4 Da PI: 11.297 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 38.2 | 3.1e-12 | 268 | 359 | 8 | 99 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 +q a d+ ++P+ar++++++a++ + s ea l+ ka elf+ +++ ++ +a + +++++ ++++av + + f+fl d vp Pavir.9KG018900.1.p 268 EQKAAAVDMGSCSFPMARVRQLMRAEDATIRASNEAVFLINKASELFLGKFAEDAYRNALKDRKKSITYDNLSTAVCSQKGFKFLSDFVP 357 566778899999*****************************************************************************9 PP NF-YC 98 rd 99 + Pavir.9KG018900.1.p 358 QR 359 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.52E-16 | 265 | 358 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-12 | 280 | 343 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 7.9E-20 | 281 | 358 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MAGKKTTPVK PAPPSTQRNG GATPGSKGRP KQASGESSAA SAKARSAPKP RKITKEKPAA 60 AKRKRDKPEP QEGGKRKKQQ ASGDAATPAK KRKKGDGPEP KPTKKKQQAG KPEKPATPSK 120 KQKSSGKPKK AATPVKKQQS PGKPEKPATP SKKQQSSGKP EKPATPVKKQ QSPGKPKKPL 180 TPAKKQKSTG KAEKPTPKKQ QQSPGKARKS PAPATTPTKK KQAKSEKPTP TKRKRGDDES 240 QNEARSPKRD SGDGDAPAST PVKKKRKEQK AAAVDMGSCS FPMARVRQLM RAEDATIRAS 300 NEAVFLINKA SELFLGKFAE DAYRNALKDR KKSITYDNLS TAVCSQKGFK FLSDFVPQRV 360 TAEDALKVTG LQQIVV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 94 | AKKRKKG |
2 | 89 | 93 | KKRKK |
3 | 218 | 234 | KKKQAKSEKPTPTKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.28702 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG018900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792625.1 | 0.0 | muscle M-line assembly protein unc-89-like isoform X1 | ||||
TrEMBL | A0A2T7BYG1 | 0.0 | A0A2T7BYG1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04487.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12826 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 7e-25 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG018900.1.p |