PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG332400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28611.2 Da PI: 5.4458 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.6e-11 | 183 | 223 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ +L++l+P+ +K++ +++Le+Av+Y+k Lq Pavir.8NG332400.3.p 183 KKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 223 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-15 | 170 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-15 | 171 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.472 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-11 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-12 | 182 | 227 | No hit | No description |
Pfam | PF00010 | 5.2E-9 | 183 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEAKGASIWS EESEMIAHLQ SMFWNSSDAD VSLSSPNSST SSCIEPGTLP TALFLPLIEK 60 ESYDTAPLQN AATDWCFDHQ SEAFASIDNA VTGDKRALLM DERRKKSKNS NKKPRIIAPV 120 LMTTSSALDD KANTELINLS SYWCCSSEDD SIGVCEESVV LKESSSSRGR SRSSKNSQSL 180 YAKKRRERIN EKLKTLQQLI PNGTKVDMST MLEEAVQYVK FLQLQIKLLS SDETWMYAPL 240 AYNHSSIDIN LNSSAKK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG332400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826894.1 | 1e-150 | transcription factor bHLH139-like isoform X1 | ||||
TrEMBL | A0A2S3IFD1 | 1e-149 | A0A2S3IFD1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00126.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 5e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG332400.3.p |