PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG311100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 338aa    MW: 36643.7 Da    PI: 6.7346
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG311100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.6e-185097148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT +Ed+ l+++++++G g+W++ ar  g++Rt+k+c++rw++yl
  Pavir.8NG311100.1.p 50 RGPWTVDEDLTLINYIAEHGEGRWNALARAAGLKRTGKSCRLRWLNYL 97
                         89********************************************97 PP
2Myb_DNA-binding53.17.5e-17103146146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg +T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Pavir.8NG311100.1.p 103 RGDFTADEQLLILDLHSRWGNR-WSKIASHLP-GRTDNEIKNYWRT 146
                          899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2244100IPR009057Homeodomain-like
PROSITE profilePS5129423.55745101IPR017930Myb domain
SuperFamilySSF466891.31E-3048144IPR009057Homeodomain-like
SMARTSM007172.3E-154999IPR001005SANT/Myb domain
PfamPF002491.4E-165097IPR001005SANT/Myb domain
CDDcd001673.09E-115297No hitNo description
Gene3DG3DSA:1.10.10.607.9E-24101151IPR009057Homeodomain-like
SMARTSM007171.9E-15102150IPR001005SANT/Myb domain
PROSITE profilePS5129418.814102152IPR017930Myb domain
PfamPF002492.1E-15103146IPR001005SANT/Myb domain
CDDcd001674.37E-11106146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEMVAVLQQR AGGGGARPAA ATAPMTAAAS SAKQEQEKEE GGSADAELRR GPWTVDEDLT  60
LINYIAEHGE GRWNALARAA GLKRTGKSCR LRWLNYLRPD VKRGDFTADE QLLILDLHSR  120
WGNRWSKIAS HLPGRTDNEI KNYWRTRVQK HAKQLNCDVN SKRFKDAMRF LWMPRLAERA  180
AAAHHSSSAS LQHQQQQAII SGDGLGALLP TAAAAAGCFE MATANAAADR SPCSVVTTTN  240
SSPCSSGTSS GSTAATTNDD DCWAAIQQDH EFWSAASNLQ HLTAGSADQQ LLYFPLAADL  300
PMQADLSGWV QGFSEGGSSS PETHQQLWSL DDIWRMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-254515022126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG311100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284141e-171KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827780.11e-151transcription factor JAMYB-like
SwissprotQ2QZJ81e-104JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A3L6PHL21e-153A0A3L6PHL2_PANMI; Uncharacterized protein
STRINGPavir.Ha00303.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-77myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]