PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.8NG308400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 156aa MW: 16498.7 Da PI: 10.759 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F + L H +H Pavir.8NG308400.1.p 45 FRCRTCGRRFATFQALGGHRTSH 67 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 16.2 | 3e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F++ L H+r+H Pavir.8NG308400.1.p 94 HRCNACGMVFPTGQALGGHMRRH 116 79********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.15E-5 | 43 | 71 | No hit | No description |
Pfam | PF13912 | 2.2E-9 | 44 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.824 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.83E-5 | 92 | 118 | No hit | No description |
Pfam | PF13912 | 6.6E-11 | 93 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.307 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
MATTTARSST VDLLLYLSLS TASKVIAKAG GGRHHHRADR ADGAFRCRTC GRRFATFQAL 60 GGHRTSHNRP RVRADGLDLL LGARPGKGAA GDVHRCNACG MVFPTGQALG GHMRRHRTAV 120 FDVADAAVPE TTTTTSFSGS DDDEGQLPIQ LIKFI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.8NG308400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828381.1 | 2e-83 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A2S3IFT9 | 4e-82 | A0A2S3IFT9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00194.1.p | 1e-108 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53600.1 | 4e-25 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.8NG308400.1.p |