PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG308000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 693aa    MW: 76912.5 Da    PI: 7.9188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG308000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08390412325
                          S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                          +e+C++++  G Ck+G  Ck+ H
  Pavir.8NG308000.1.p 390 QEECKYYSTPGGCKFGKACKYLH 412
                          699******************** PP
2zf-CCCH352.4e-11437461226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          + ++C++++rtG Cky  +CkF+H+
  Pavir.8NG308000.1.p 437 GKKECPYYMRTGSCKYSTNCKFHHP 461
                          6789********************9 PP
3zf-CCCH30.27.5e-10629654227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C +++r+G CkyG+ C F+H++
  Pavir.8NG308000.1.p 629 DQPVCTYYSRFGVCKYGPACMFNHPF 654
                          6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484521.49E-2863174IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.109.2E-2464183IPR011990Tetratricopeptide-like helical domain
SMARTSM000282606495IPR019734Tetratricopeptide repeat
PROSITE profilePS5029316.94188292IPR013026Tetratricopeptide repeat-containing domain
SMARTSM000281796129IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.9396129IPR019734Tetratricopeptide repeat
PROSITE profilePS5000510.355130163IPR019734Tetratricopeptide repeat
SMARTSM000280.0055130163IPR019734Tetratricopeptide repeat
PfamPF131810.075130163IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.841180213IPR019734Tetratricopeptide repeat
SMARTSM00028230180213IPR019734Tetratricopeptide repeat
SuperFamilySSF484529.61E-34183307IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.103.9E-17184305IPR011990Tetratricopeptide-like helical domain
SMARTSM000281.9214247IPR019734Tetratricopeptide repeat
SMARTSM0002896255292IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.871259292IPR019734Tetratricopeptide repeat
SuperFamilySSF484522.74E-13316376IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.10.150.1601.7E-9316363IPR023114Elongated TPR repeat-containing domain
PROSITE profilePS5000510.414319352IPR019734Tetratricopeptide repeat
PROSITE profilePS5029310.372319352IPR013026Tetratricopeptide repeat-containing domain
SMARTSM000280.0012319352IPR019734Tetratricopeptide repeat
PROSITE profilePS5010312.84387415IPR000571Zinc finger, CCCH-type
SMARTSM003560.004387414IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5391412IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4393414IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094435463IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5435462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6437462IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-9437461IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4441460IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.718581609IPR000571Zinc finger, CCCH-type
SMARTSM003560.22581608IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624627655IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4627654IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5628654IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-7629654IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MGQGGSRMVS DEARRSDGSG GPGKKLQSTT GENCGDAEEC RSIRRCQSFK TLPESDPDRA  60
AAMADERKGK GNAAFLAGCF EEAALTVAIA LAPNNHILYS NRSAARASLH RYADALADAQ  120
KTVELRPDWA EGYSRLGAAH LGLGDATIAV AAYAKGLALE PDNEGLNVGL EDAKKERKEM  180
KAAAQEAGNA AYKKDCETAI QHYMKAMELD DEDISYLTNC AAVDFEMGKY DECIKDCDKA  240
VERGRELRAD FKVISRALTR KGTALAKHAK CSKDYDVAIE TFQKALREHR NPGTLKKLNE  300
AERAKKELLQ QEYYDPKWAE EEREKGTEFF KEQKYPEAIK HYTEALRRNP KDPRGFDDKG  360
SVYYSENHRK ASYEGARDKR KEDISEGSAQ EECKYYSTPG GCKFGKACKY LHREGKEGKA  420
EAEKVDLNFL DLPLRPGKKE CPYYMRTGSC KYSTNCKFHH PDPTNVSSKE PVLEHENADT  480
PQQNFQGSSQ TSVPIWSDQR AMNGQHVPFL APAQSYSAGM IPLQGMYPSP EWSGYHQVPL  540
NPNYPPGVPF QHFLAHMNHP MHKEADMPRN QQVPIDEYPE RPGQPECQHF VRSSFCKYKM  600
KCRYHHPRSR LPAPMTGGLS PLGLPIKPDQ PVCTYYSRFG VCKYGPACMF NHPFNFGPPV  660
AVPTAAPPLP GQFPTRGGAT GGAARAAAPP WP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3uq3_A2e-3418836112181Heat shock protein STI1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG308000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302232.11e-171zinc finger CCCH domain-containing protein 65 isoform X2
STRINGPavir.Ha00283.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-62C3H family protein