PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG304900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 379aa    MW: 39947.3 Da    PI: 6.9166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG304900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.7e-14179224555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR++iN+++ eL +++P +     kK++Ka+iL  A +Y+k+Lq
  Pavir.8NG304900.1.p 179 HIIAERKRREKINKRLIELSTVIPGL-----KKMDKATILSDAAKYVKELQ 224
                          889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.364174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17179235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11179224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-14179228No hitNo description
SuperFamilySSF474591.44E-16179235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-14180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEDSSMFMQW AIDTLLNEHP EPAIIGDGGG EATFPALQAL RDASHAVEMV RELTAHEARD  60
AANSWSSGGD GDITDGGSGT TVRAPAAARD SHGSWPPSPP SSLIRRALPP SNNTNLPLVS  120
WNFVTGSAQP GSGAMVEDAA APPPRSLPEP AHGSPPPTRR RASLRSLEAA SPASYAPDHI  180
IAERKRREKI NKRLIELSTV IPGLKKMDKA TILSDAAKYV KELQQRLKAL EEEEAAGSNG  240
RSNETVVRVK NKKPCNAAVA APDENDGSPS PTSASSGPPA TGKPALPEIQ ARFSEKSAMV  300
RIHCGGGKGV AVTVLAEVED IGLSIVHANV MPFSACTVII TITAKASSLL SFLLFHLLFS  360
ALIQHSELLL LHLISKLY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERKRRE
2183188RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG304900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806554.10.0transcription factor bHLH18-like
TrEMBLA0A2T7E7X70.0A0A2T7E7X7_9POAL; Uncharacterized protein
STRINGPavir.J26871.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.14e-32bHLH family protein