PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG298100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 264aa MW: 28213.3 Da PI: 7.9161 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Pavir.8NG298100.1.p 75 YSCTFCQREFRSAQALGGHMNVH 97 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.53E-6 | 72 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.8E-4 | 73 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0053 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 75 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MNSSTAMDQI GKYWAMWGAR RSGGGSGSSS SSTVRPIPAW AEAAAAGSEP SWEEQAFARD 60 AAAHLGGCVW PPRSYSCTFC QREFRSAQAL GGHMNVHRRD RALLRQGGSS PEDVHAPNDQ 120 PQQGALLYRV ASNPSITTVT TASGTAGSAA KGDAQDMTPT SYLSTIIKES KNKLLMSMPA 180 SMEMREDRQA IDQCDHGDSD AEESARTTKR RRLNHAPAAA LLIFVQPLAA ATEVTGCESS 240 QALQGLDHYA KYFKGDPRRA GYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 70 | 97 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 70 | 97 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 212 | KRRRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.34328 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG298100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038716 | 1e-75 | BT038716.1 Zea mays full-length cDNA clone ZM_BFb0313F12 mRNA, complete cds. | |||
GenBank | EU972109 | 1e-75 | EU972109.1 Zea mays clone 375181 zinc finger, C2H2 type family protein mRNA, complete cds. | |||
GenBank | HQ858712 | 1e-75 | HQ858712.1 Zea mays clone UT1168 C2H2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828169.1 | 1e-142 | uncharacterized protein LOC112903166 | ||||
TrEMBL | A0A2T7CRF3 | 1e-142 | A0A2T7CRF3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00323.1.p | 1e-175 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 5e-22 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG298100.1.p |